| On easy implementation of a variant of the replica exchange with solute tempering in GROMACS T Terakawa, T Kameda, S Takada Journal of computational chemistry 32 (7), 1228-1234, 2011 | 176 | 2011 |
| Machine-learning-guided mutagenesis for directed evolution of fluorescent proteins Y Saito, M Oikawa, H Nakazawa, T Niide, T Kameda, K Tsuda, M Umetsu ACS synthetic biology 7 (9), 2014-2022, 2018 | 154 | 2018 |
| Arginine-assisted solubilization system for drug substances: solubility experiment and simulation A Hirano, T Kameda, T Arakawa, K Shiraki The Journal of Physical Chemistry B 114 (42), 13455-13462, 2010 | 105 | 2010 |
| Liquid-like droplet formation by tumor suppressor p53 induced by multivalent electrostatic interactions between two disordered domains K Kamagata, S Kanbayashi, M Honda, Y Itoh, H Takahashi, T Kameda, ... Scientific reports 10 (1), 580, 2020 | 103 | 2020 |
| NMR characterization of the interactions between lyso-GM1 aqueous micelles and amyloid β M Yagi-Utsumi, T Kameda, Y Yamaguchi, K Kato FEBS letters 584 (4), 831-836, 2010 | 73 | 2010 |
| Comprehensive prediction of lncRNA–RNA interactions in human transcriptome G Terai, J Iwakiri, T Kameda, M Hamada, K Asai BMC genomics 17, 153-164, 2016 | 64 | 2016 |
| Lanthanide-assisted NMR evaluation of a dynamic ensemble of oligosaccharide conformations S Yamamoto, Y Zhang, T Yamaguchi, T Kameda, K Kato Chemical Communications 48 (39), 4752-4754, 2012 | 54 | 2012 |
| Machine-learning-guided library design cycle for directed evolution of enzymes: the effects of training data composition on sequence space exploration Y Saito, M Oikawa, T Sato, H Nakazawa, T Ito, T Kameda, K Tsuda, ... Acs Catalysis 11 (23), 14615-14624, 2021 | 53 | 2021 |
| A covalent G-site inhibitor for glutathione S-transferase Pi (GSTP 1-1) Y Shishido, F Tomoike, Y Kimura, K Kuwata, T Yano, K Fukui, H Fujikawa, ... Chemical Communications 53 (81), 11138-11141, 2017 | 52 | 2017 |
| Interaction of arginine with Capto MMC in multimodal chromatography A Hirano, T Arakawa, T Kameda Journal of Chromatography A 1338, 58-66, 2014 | 52 | 2014 |
| Molecular dynamics simulation of the arginine-assisted solubilization of caffeic acid: intervention in the interaction A Hirano, T Kameda, D Shinozaki, T Arakawa, K Shiraki The Journal of Physical Chemistry B 117 (25), 7518-7527, 2013 | 47 | 2013 |
| Aromaphilicity Index of Amino Acids: Molecular Dynamics Simulations of the Protein Binding Affinity for Carbon Nanomaterials A Hirano, T Kameda ACS Applied Nano Materials 4 (3), 2486-2495, 2021 | 44 | 2021 |
| Arginine Side Chains as a Dispersant for Individual Single‐Wall Carbon Nanotubes A Hirano, T Tanaka, H Kataura, T Kameda Chemistry–A European Journal 20 (17), 4922-4930, 2014 | 44 | 2014 |
| Pressure and temperature phase diagram for liquid–liquid phase separation of the RNA-binding protein fused in sarcoma S Li, T Yoshizawa, R Yamazaki, A Fujiwara, T Kameda, R Kitahara The Journal of Physical Chemistry B 125 (25), 6821-6829, 2021 | 40 | 2021 |
| Multiscale methods for protein folding simulations W Li, H Yoshii, N Hori, T Kameda, S Takada Methods 52 (1), 106-114, 2010 | 36 | 2010 |
| Paddling mechanism for the substrate translocation by AAA+ motor revealed by multiscale molecular simulations N Koga, T Kameda, K Okazaki, S Takada Proceedings of the National Academy of Sciences 106 (43), 18237-18242, 2009 | 36 | 2009 |
| Secondary structure provides a template for the folding of nearby polypeptides T Kameda, S Takada Proceedings of the National Academy of Sciences 103 (47), 17765-17770, 2006 | 36 | 2006 |
| Solution Structure of the Q41N Variant of Ubiquitin as a Model for the Alternatively Folded N2 State of Ubiquitin S Kitazawa, T Kameda, M Yagi-Utsumi, K Sugase, NJ Baxter, K Kato, ... Biochemistry 52 (11), 1874-1885, 2013 | 32 | 2013 |
| Developing a codon optimization method for improved expression of recombinant proteins in actinobacteria Y Saito, W Kitagawa, T Kumagai, N Tajima, Y Nishimiya, K Tamano, ... Scientific reports 9 (1), 8338, 2019 | 30 | 2019 |
| Improved accuracy in rna–protein rigid body docking by incorporating force field for molecular dynamics simulation into the scoring function J Iwakiri, M Hamada, K Asai, T Kameda Journal of chemical theory and computation 12 (9), 4688-4697, 2016 | 30 | 2016 |
