Nicholas H Putnam

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Astrid TerryProject Manager ENIGMA, Lawrence Berkeley National LabVerified email at lbl.gov
mark q martindaleWhitney Marine Lab, Univ. of FLoridaVerified email at whitney.ufl.edu
Paul Havlak, Ph.D.Senior Bioinformatics Engineer, Driscoll's Inc.Verified email at driscolls.com
Jerzy JurkaGenetic Information Research InstituteVerified email at girinst.org
Philip HugenholtzAustralian Centre for Ecogenomics, SCMB, The University of QueenslandVerified email at uq.edu.au
Katherine (Trina) McMahonProfessor of Bacteriology, and Civil and Environmental Engineering, University of Wisconsin MadisonVerified email at engr.wisc.edu
Steven James HallamUniversity of British ColumbiaVerified email at mail.ubc.ca
edward francis delongProfessor, University of Hawaii, ManoaVerified email at hawaii.edu
Diego MartinezVeritas GeneticsVerified email at veritasgenetics.com
Jeremy SchmutzHudsonAlpha Institute for Biotechnology and Joint Genome InstituteVerified email at hudsonalpha.com
Luis LarrondoFull Professor, DGMM, Pontificia Universidad Católica de ChileVerified email at bio.puc.cl
Jane GrimwoodFaculty Investigator, HudsonAlpha Institute for BiotechnologyVerified email at hudsonalpha.com
Christa SchleperProfessor of Genetics and Microbiology, University of Vienna, AustriaVerified email at univie.ac.at
Kostas KonstantinidisGeorgia TechVerified email at ce.gatech.edu
Jie LvSt. Jude Children's Research HospitalVerified email at stjude.org
Jeffrey BooreFounder, owner, and CEO, Phenome Ventures, LLCVerified email at PhenomeVentures.com
Sucheta TripathySenior Principal Scientist, Former Ramalingaswamy Fellow (IICB) and Professor(AcSIR)Verified email at iicb.res.in
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch

Nicholas H Putnam

CBO, Stealth-mode startup

Verified email at rice.edu

Bioinformatics Comparative Genomics Genome Evolution


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Phytozome: a comparative platform for green plant genomics DM Goodstein, S Shu, R Howson, R Neupane, RD Hayes, J Fazo, ... Nucleic acids research 40 (D1), D1178-D1186, 2012	5111	2012
The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) GA Tuskan, S Difazio, S Jansson, J Bohlmann, I Grigoriev, U Hellsten, ... science 313 (5793), 1596-1604, 2006	5102	2006
The Genome of the Diatom Thalassiosira Pseudonana: Ecology, Evolution, and Metabolism EV Armbrust, JA Berges, C Bowler, BR Green, D Martinez, NH Putnam, ... Science 306 (5693), 79-86, 2004	2458	2004
Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021	2074	2021
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes S Aparicio, J Chapman, E Stupka, N Putnam, J Chia, P Dehal, ... Science 297 (5585), 1301-1310, 2002	1911	2002
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins P Dehal, Y Satou, RK Campbell, J Chapman, B Degnan, A De Tomaso, ... Science 298 (5601), 2157-2167, 2002	1870	2002
Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization NH Putnam, M Srivastava, U Hellsten, B Dirks, J Chapman, A Salamov, ... science 317 (5834), 86-94, 2007	1734	2007
The amphioxus genome and the evolution of the chordate karyotype NH Putnam, T Butts, DEK Ferrier, RF Furlong, U Hellsten, T Kawashima, ... Nature 453 (7198), 1064-1071, 2008	1731	2008
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) D Martinez, RM Berka, B Henrissat, M Saloheimo, M Arvas, SE Baker, ... Nature biotechnology 26 (5), 553-560, 2008	1398	2008
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis BM Tyler, S Tripathy, X Zhang, P Dehal, RHY Jiang, A Aerts, ... Science 313 (5791), 1261-1266, 2006	1263	2006
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans N King, MJ Westbrook, SL Young, A Kuo, M Abedin, J Chapman, ... Nature 451 (7180), 783-788, 2008	1259	2008
The Amphimedon queenslandica genome and the evolution of animal complexity M Srivastava, O Simakov, J Chapman, B Fahey, MEA Gauthier, T Mitros, ... Nature 466 (7307), 720-726, 2010	1183	2010
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78 D Martinez, LF Larrondo, N Putnam, MDS Gelpke, K Huang, J Chapman, ... Nature biotechnology 22 (6), 695-700, 2004	1143	2004
The Trichoplax genome and the nature of placozoans M Srivastava, E Begovic, J Chapman, NH Putnam, U Hellsten, ... Nature 454 (7207), 955-960, 2008	1018	2008
Genome evolution in the allotetraploid frog Xenopus laevis AM Session, Y Uno, T Kwon, JA Chapman, A Toyoda, S Takahashi, ... Nature 538 (7625), 336-343, 2016	1003	2016
The genome of the Western clawed frog Xenopus tropicalis U Hellsten, RM Harland, MJ Gilchrist, D Hendrix, J Jurka, V Kapitonov, ... Science 328 (5978), 633-636, 2010	937	2010
The dynamic genome of Hydra JA Chapman, EF Kirkness, O Simakov, SE Hampson, T Mitros, ... Nature 464 (7288), 592-596, 2010	900	2010
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities HG Martin, N Ivanova, V Kunin, F Warnecke, KW Barry, AC McHardy, ... Nature biotechnology 24 (10), 1263-1269, 2006	861	2006
Reverse methanogenesis: testing the hypothesis with environmental genomics SJ Hallam, N Putnam, CM Preston, JC Detter, D Rokhsar, PM Richardson, ... Science 305 (5689), 1457-1462, 2004	800	2004
Chromosome-scale shotgun assembly using an in vitro method for long-range linkage NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ... Genome research 26 (3), 342-350, 2016	786	2016

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