| Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data M Vital, AC Howe, JM Tiedje MBio 5 (2), 10.1128/mbio. 00889-14, 2014 | 1048 | 2014 |
| Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter L Žifčáková, T Větrovský, A Howe, P Baldrian Environmental microbiology 18 (1), 288-301, 2016 | 434 | 2016 |
| The khmer software package: enabling efficient nucleotide sequence analysis MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ... F1000Research 4, 2015 | 377 | 2015 |
| Tackling soil diversity with the assembly of large, complex metagenomes AC Howe, JK Jansson, SA Malfatti, SG Tringe, JM Tiedje, CT Brown Proceedings of the National Academy of Sciences 111 (13), 4904-4909, 2014 | 372 | 2014 |
| A meta-analysis of global fungal distribution reveals climate-driven patterns T Větrovský, P Kohout, M Kopecký, A Machac, M Man, BD Bahnmann, ... Nature communications 10 (1), 5142, 2019 | 364 | 2019 |
| Demonstrating microbial co-occurrence pattern analyses within and between ecosystems RJ Williams, A Howe, KS Hofmockel Frontiers in microbiology 5, 358, 2014 | 337 | 2014 |
| Scaling metagenome sequence assembly with probabilistic de Bruijn graphs J Pell, A Hintze, R Canino-Koning, A Howe, JM Tiedje, CT Brown Proceedings of the National Academy of Sciences 109 (33), 13272-13277, 2012 | 288 | 2012 |
| A reference-free algorithm for computational normalization of shotgun sequencing data CT Brown, A Howe, Q Zhang, AB Pyrkosz, TH Brom arXiv preprint arXiv:1203.4802, 2012 | 255 | 2012 |
| The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus EM Schwarz, PK Korhonen, BE Campbell, ND Young, AR Jex, A Jabbar, ... Genome biology 14, 1-18, 2013 | 249 | 2013 |
| Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems DW Graham, G Bergeron, MW Bourassa, J Dickson, F Gomes, A Howe, ... Annals of the New York Academy of Sciences 1441 (1), 17-30, 2019 | 218 | 2019 |
| Feed in summer, rest in winter: microbial carbon utilization in forest topsoil L Žifčáková, T Větrovský, V Lombard, B Henrissat, A Howe, P Baldrian Microbiome 5, 1-12, 2017 | 160 | 2017 |
| Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements RD Stedtfeld, X Guo, TM Stedtfeld, H Sheng, MR Williams, K Hauschild, ... FEMS Microbiology Ecology 94 (9), fiy130, 2018 | 155 | 2018 |
| Strategies to improve reference databases for soil microbiomes J Choi, F Yang, R Stepanauskas, E Cardenas, A Garoutte, R Williams, ... The ISME journal 11 (4), 829-834, 2017 | 125 | 2017 |
| Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice A Howe, DL Ringus, RJ Williams, ZN Choo, SM Greenwald, SM Owens, ... The ISME journal 10 (5), 1217-1227, 2016 | 106 | 2016 |
| These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure Q Zhang, J Pell, R Canino-Koning, AC Howe, CT Brown PloS one 9 (7), e101271, 2014 | 98 | 2014 |
| Metagenomic approaches for direct and cell culture evaluation of the virological quality of wastewater TG Aw, A Howe, JB Rose Journal of virological methods 210, 15-21, 2014 | 97 | 2014 |
| Metagenomic insights into the degradation of resistant starch by human gut microbiota M Vital, A Howe, N Bergeron, RM Krauss, JK Jansson, JM Tiedje Applied and environmental microbiology 84 (23), e01562-18, 2018 | 94 | 2018 |
| Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application E Lopatto, J Choi, A Colina, L Ma, A Howe, S Hinsa-Leasure PLoS One 14 (8), e0220770, 2019 | 64 | 2019 |
| Revealing the bacterial butyrate synthesis pathways by analyzing (meta) genomic data. mBio 5: e00889-14 M Vital, AC Howe, JM Tiedje | 56 | 2014 |
| Temporal dynamics of bacterial communities in soil and leachate water after swine manure application EL Rieke, ML Soupir, TB Moorman, F Yang, AC Howe Frontiers in microbiology 9, 3197, 2018 | 55 | 2018 |
Michelle L SoupirProfessor, Iowa State UniversityVerified email at iastate.edu