| Sensitivity analysis approaches applied to systems biology models Z Zi IET Systems Biology 5, 336, 2011 | 442 | 2011 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 262 | 2016 |
| Dynamics of TGF-β/Smad signaling Z Zi, DA Chapnick, X Liu FEBS letters 586 (14), 1921-1928, 2012 | 250 | 2012 |
| In silico identification of the key components and steps in IFN-γ induced JAK-STAT signaling pathway Z Zi, KH Cho, MH Sung, X Xia, J Zheng, Z Sun FEBS letters 579 (5), 1101-1108, 2005 | 161 | 2005 |
| Quantitative analysis of transient and sustained transforming growth factor‐β signaling dynamics Z Zi, Z Feng, DA Chapnick, M Dahl, D Deng, E Klipp, A Moustakas, X Liu Molecular systems biology 7 (1), 492, 2011 | 132 | 2011 |
| Constraint-based modeling and kinetic analysis of the Smad dependent TGF-β signaling pathway Z Zi, E Klipp PloS one 2 (9), e936, 2007 | 106 | 2007 |
| SBML-PET: a Systems Biology Markup Language-based parameter estimation tool Z Zi, E Klipp Bioinformatics 22 (21), 2704-2705, 2006 | 106 | 2006 |
| Programmable extracellular vesicles for macromolecule delivery and genome modifications X Zhang, Q Xu, Z Zi, Z Liu, C Wan, L Crisman, J Shen, X Liu Developmental cell 55 (6), 784-801. e9, 2020 | 95 | 2020 |
| SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool Z Zi, Y Zheng, AE Rundell, E Klipp BMC bioinformatics 9, 1-14, 2008 | 92 | 2008 |
| A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae Z Zi, W Liebermeister, E Klipp PloS one 5 (3), e9522, 2010 | 88 | 2010 |
| Time-Dependent Quantitative Multicomponent Control of the G1-S Network by the Stress-Activated Protein Kinase Hog1 upon Osmostress MÀ Adrover, Z Zi, A Duch, J Schaber, A Gonzalez-Novo, J Jimenez, ... Science signaling 4 (192), ra63-ra63, 2011 | 69 | 2011 |
| Molecular engineering of the TGF-β signaling pathway Z Zi Journal of molecular biology 431 (15), 2644-2654, 2019 | 57 | 2019 |
| Spatiotemporal control of TGF-β signaling with light Y Li, M Lee, N Kim, G Wu, D Deng, JM Kim, X Liu, WD Heo, Z Zi ACS synthetic biology 7 (2), 443-451, 2018 | 45 | 2018 |
| Characterization of early autophagy signaling by quantitative phosphoproteomics KTG Rigbolt, M Zarei, A Sprenger, AC Becker, B Diedrich, X Huang, ... Autophagy 10 (2), 356-371, 2014 | 37 | 2014 |
| PhyloVelo enhances transcriptomic velocity field mapping using monotonically expressed genes K Wang, L Hou, X Wang, X Zhai, Z Lu, Z Zi, W Zhai, X He, C Curtis, ... Nature Biotechnology 42 (5), 778-789, 2024 | 33 | 2024 |
| Cell-type-specific role of CHK2 in mediating DNA damage-induced G2 cell cycle arrest MTM van Jaarsveld, D Deng, D Ordoñez-Rueda, M Paulsen, EAC Wiemer, ... Oncogenesis 9 (3), 35, 2020 | 32 | 2020 |
| SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models Z Zi Bioinformatics 27 (7), 1028-1029, 2011 | 23 | 2011 |
| Cellular signaling is potentially regulated by cell density in receptor trafficking networks Z Zi, E Klipp FEBS letters 581 (24), 4589-4595, 2007 | 23 | 2007 |
| Inferring cellular regulatory networks with Bayesian model averaging for linear regression (BMALR) X Huang, Z Zi Molecular BioSystems 10 (8), 2023-2030, 2014 | 18 | 2014 |
| Robustness analysis of the IFN-γ induced JAK-STAT signaling pathway ZK Zi, ZR Sun Journal of Computer Science and Technology 20 (4), 491-495, 2005 | 16 | 2005 |
