| NIH SenNet Consortium to map senescent cells throughout the human lifespan to understand physiological health Brown University TDA Wang Siyuan (Steven) 34, ... Nature aging 2 (12), 1090-1100, 2022 | 82 | 2022 |
| Spatial mapping of cellular senescence: emerging challenges and opportunities AU Gurkar, AA Gerencser, AL Mora, AC Nelson, AR Zhang, AB Lagnado, ... Nature aging 3 (7), 776-790, 2023 | 68 | 2023 |
| SCS: cell segmentation for high-resolution spatial transcriptomics H Chen, D Li, Z Bar-Joseph Nature Methods 20, 1237–1243, 2023 | 59 | 2023 |
| DIFFUSE: predicting isoform functions from sequences and expression profiles via deep learning H Chen, D Shaw, J Zeng, D Bu, T Jiang Bioinformatics 35 (14), i284-i294, 2019 | 48 | 2019 |
| DeepIsoFun: a deep domain adaptation approach to predict isoform functions D Shaw, H Chen, T Jiang Bioinformatics 35 (15), 2535-2544, 2018 | 35 | 2018 |
| DeepLPI: a multimodal deep learning method for predicting the interactions between lncRNAs and protein isoforms D Shaw, H Chen, M Xie, T Jiang BMC bioinformatics 22 (1), 1-22, 2021 | 22 | 2021 |
| Drug target prediction through deep learning functional representation of gene signatures H Chen, FJ King, B Zhou, Y Wang, CJ Canedy, J Hayashi, Y Zhong, ... Nature communications 15 (1), 1853, 2024 | 21 | 2024 |
| FINER: enhancing the prediction of tissue-specific functions of isoforms by refining isoform interaction networks H Chen, D Shaw, D Bu, T Jiang NAR genomics and bioinformatics 3 (2), lqab057, 2021 | 6 | 2021 |
| A unified analysis of atlas single cell data H Chen, ND Nguyen, M Ruffalo, Z Bar-Joseph bioRxiv, 2022 | 2 | 2022 |
| Recovering single-cell expression profiles from spatial transcriptomics with scResolve H Chen, YJ Lee, JA Ovando-Ricardez, L Rosas, M Rojas, AL Mora, ... Cell Reports Methods 4 (10), 2024 | 1 | 2024 |
| Reference-informed prediction of alternative splicing and splicing-altering mutations from sequences C Xu, S Bao, Y Wang, W Li, H Chen, Y Shen, T Jiang, C Zhang Genome Research 34 (7), 1052-1065, 2024 | 1 | 2024 |
| Protocol to recover single-cell gene expression profiles from spatial transcriptomics data using cluster computing YJ Lee, H Chen, J Lugo-Martinez STAR protocols 6 (1), 103636, 2025 | | 2025 |
| Isoform Function Prediction Based on Heterogeneous Graph Attention Networks K Guo, Y Li, H Chen, HB Shen, Y Yang 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023 | | 2023 |
| Cell segmentation for high-resolution spatial transcriptomics H Chen, D Li, Z Bar-Joseph Research in Computational Molecular Biology: 27th Annual International …, 2023 | | 2023 |
| A Global Analysis of Alternative Splicing of Dichocarpum Medicinal Plants, Ranunculales DC Hao*, H Chen*, PG Xiao, T Jiang Current Genomics 23 (3), 207-216, 2022 | | 2022 |
| Deep Learning Methods for High-Resolution Functional Annotation and Discovery of Novel Connections Between Gene Sets H Chen University of California, Riverside, 2021 | | 2021 |
Tao JiangUC RiversideVerified email at cs.ucr.edu