Pedro Mendes

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Douglas KellUniversity of LiverpoolVerified email at liv.ac.uk
Kieran SmallboneMCISB / Mathematics / Computer Science, University of ManchesterVerified email at manchester.ac.uk
Lloyd W. SumnerUniversity of Missouri, Biochemistry Dept, Bond Life Sciences Center, MU Metabolomics, IPGVerified email at missouri.edu
Stefan HoopsResearch Associate Professor, Biocomplexity Institute & Initiative, University of VirginiaVerified email at virginia.edu
Neil SwainstonEpoch BiodesignVerified email at epochbiodesign.com
Jürgen PahleIndependent Group Leader, Heidelberg University, GermanyVerified email at bioquant.uni-heidelberg.de
Alberto de la FuenteQatar Biomedical Research InstituteVerified email at hbku.edu.qa
Sven SahleUniversität HeidelbergVerified email at bioquant.uni-heidelberg.de
Richard DixonDistinguished Professor of Biology Emeritus, University of North TexasVerified email at unt.edu
Hans WesterhoffUniversity of Amsterdam, VU University Amsterdam, University of ManchesterVerified email at manchester.ac.uk
Julio R. Banga ( ORCID 0000-0002-42...Research Professor, MBG-CSIC, Pontevedra (Spain)Verified email at csic.es
Joseph Olufemi DadaAfe Babalola University, Ado-EkitiVerified email at abuad.edu.ng
Oliver FiehnUC DavisVerified email at ucdavis.edu
Snoep JLStellenbosch University; Manchester University; Vrije Universiteit AmsterdamVerified email at sun.ac.za
Warwick DunnDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolVerified email at liverpool.ac.uk
Vladimir ShulaevProfessor, University of North TexasVerified email at unt.edu
Argelia LorenceJames and Wanda Lee Vaughn Endowed Professor, Arkansas State UniversityVerified email at astate.edu
Paul DobsonScruffy Biotech LtdVerified email at manchester.ac.uk
Norman W. PatonProfessor of Computer Science, University of ManchesterVerified email at manchester.ac.uk
Vangelis SimeonidisSenior Project Manager, PATHVerified email at path.org

Pedro Mendes

University of Connecticut

Verified email at uchc.edu - Homepage

systems biology bioinformatics computational biology modeling simulation


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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003	3879	2003
COPASI—a complex pathway simulator S Hoops, S Sahle, R Gauges, C Lee, J Pahle, N Simus, M Singhal, L Xu, ... Bioinformatics 22 (24), 3067-3074, 2006	3121	2006
Plant metabolomics: large-scale phytochemistry in the functional genomics era LW Sumner, P Mendes, RA Dixon Phytochemistry 62 (6), 817-836, 2003	1481	2003
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1229	2013
Parameter estimation in biochemical pathways: a comparison of global optimization methods CG Moles, P Mendes, JR Banga Genome research 13 (11), 2467-2474, 2003	1149	2003
ChEBI in 2016: Improved services and an expanding collection of metabolites J Hastings, G Owen, A Dekker, M Ennis, N Kale, V Muthukrishnan, ... Nucleic acids research 44 (D1), D1214-D1219, 2016	1051	2016
Potential of metabolomics as a functional genomics tool RJ Bino, RD Hall, O Fiehn, J Kopka, K Saito, J Draper, BJ Nikolau, ... Trends in plant science 9 (9), 418-425, 2004	933	2004
GEPASI: a software package for modelling the dynamics, steady states and control of biochemical and other systems P Mendes Bioinformatics 9 (5), 563-571, 1993	910	1993
Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation. P Mendes, D Kell Bioinformatics (Oxford, England) 14 (10), 869-883, 1998	905	1998
Biochemistry by numbers: simulation of biochemical pathways with Gepasi 3 P Mendes Trends in biochemical sciences 22 (9), 361-363, 1997	773	1997
Minimum information requested in the annotation of biochemical models (MIRIAM) NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ... Nature biotechnology 23 (12), 1509-1515, 2005	720	2005
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology MJ Herrgård, N Swainston, P Dobson, WB Dunn, KY Arga, M Arvas, ... Nature biotechnology 26 (10), 1155-1160, 2008	698	2008
Discovery of meaningful associations in genomic data using partial correlation coefficients A De La Fuente, N Bing, I Hoeschele, P Mendes Bioinformatics 20 (18), 3565-3574, 2004	698	2004
The metabolomics standards initiative (MSI) O Fiehn, D Robertson, J Griffin, M van der Werf, B Nikolau, N Morrison, ... Metabolomics 3, 175-178, 2007	542	2007
myo-Inositol Oxygenase Offers a Possible Entry Point into Plant Ascorbate Biosynthesis A Lorence, BI Chevone, P Mendes, CL Nessler Plant Physiology 134 (3), 1200-1205, 2004	538	2004
Metabolic profiling of Medicago truncatula cell cultures reveals the effects of biotic and abiotic elicitors on metabolism CD Broeckling, DV Huhman, MA Farag, JT Smith, GD May, P Mendes, ... Journal of experimental botany 56 (410), 323-336, 2005	463	2005
A hybrid approach for efficient and robust parameter estimation in biochemical pathways M Rodriguez-Fernandez, P Mendes, JR Banga Biosystems 83 (2-3), 248-265, 2006	409	2006
Gene networks: how to put the function in genomics P Brazhnik, A De La Fuente, P Mendes TRENDS in Biotechnology 20 (11), 467-472, 2002	392	2002
The metabolomics standards initiative Nature biotechnology 25 (8), 846-848, 2007	348	2007
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	343	2011

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