Gregory Kucherov

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Laurent Noéassociate professor (computer science) enseignant-chercheur (informatique), Lille (France)Verified email at univ-lille.fr
Karel BřindaInria Starting Faculty, Inria/IRISA RennesVerified email at inria.fr
Philippe JacquesUniversite de liegeVerified email at uliege.be
Mikhail RoytbergHead of Applied Math Lab, Institute of Mathematical Problems in Biology RAS, Pushchino, Russia Verified email at lpm.org.ru
Vladimir GrebinskySoftware Developer, Google LtdVerified email at google.com
Michael RusinowitchINRIAVerified email at loria.fr
Maxime CrochemoreKCLVerified email at kcl.ac.uk
Maude PupinMaître de conférences en informatique, Université de LilleVerified email at univ-lille.fr
Michael BaymHarvard Medical SchoolVerified email at hms.harvard.edu
Ania GambinInstitute of Informatics University of WarsawVerified email at mimuw.edu.pl
Tatiana StarikovskayaEcole Normale SupérieureVerified email at ens.fr
Slawomir LasotaUniversity of Warsaw, prof. of computer scienceVerified email at mimuw.edu.pl
Maciek SykulskiMedical University of WarsawVerified email at mimuw.edu.pl
Thierry LecroqLITIS UR 4108, University of Rouen Normandy, FranceVerified email at univ-rouen.fr
Yakov NekrichAssociate Professor, Michigan Technological UniveristyVerified email at uwaterloo.ca
Justin O'GradyOxford Nanopore Technologies and University of East AngliaVerified email at uea.ac.uk
William HanageHarvard T H Chan School of Public HealthVerified email at hsph.harvard.edu
Lauren A CowleyUniversity of BathVerified email at bath.ac.uk
Alanna CallendrelloResearch Assistant II, Harvard UniversityVerified email at hsph.harvard.edu
Themoula CharalampousVerified email at kcl.ac.uk

Gregory Kucherov

Directeur de recherche CNRS, LIGM, Université Gustave Eiffel, France

Verified email at univ-mlv.fr - Homepage

Algorithms Computational Biology


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mreps: efficient and flexible detection of tandem repeats in DNA R Kolpakov, G Bana, G Kucherov Nucleic acids research 31 (13), 3672-3678, 2003	488	2003
Finding maximal repetitions in a word in linear time R Kolpakov, G Kucherov 40th annual symposium on foundations of computer science (Cat. No. 99CB37039 …, 1999	423	1999
YASS: enhancing the sensitivity of DNA similarity search L Noé, G Kucherov Nucleic acids research 33 (suppl_2), W540-W543, 2005	417	2005
NORINE: a database of nonribosomal peptides S Caboche, M Pupin, V Leclere, A Fontaine, P Jacques, G Kucherov Nucleic acids research 36 (suppl_1), D326-D331, 2007	382	2007
Lecture notes in computer science (including subseries lecture notes in artificial intelligence and lecture notes in bioinformatics): Preface M Abe, K Aoki, G Ateniese, R Avanzi, Z Beerliová, O Billet, A Biryukov, ... Lecture Notes in Computer Science (including subseries Lecture Notes in …, 2006	272*	2006
Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity S Caboche, V Leclère, M Pupin, G Kucherov, P Jacques Journal of bacteriology 192 (19), 5143-5150, 2010	166	2010
A unifying framework for seed sensitivity and its application to subset seeds G Kucherov, L Noé, M Roytberg Journal of bioinformatics and computational biology 4 (02), 553-569, 2006	116	2006
Optimal reconstruction of graphs under the additive model V Grebinski, G Kucherov Algorithmica 28, 104-124, 2000	111	2000
Spaced seeds improve k-mer-based metagenomic classification K Břinda, M Sykulski, G Kucherov Bioinformatics 31 (22), 3584-3592, 2015	110	2015
On maximal repetitions in words R Kolpakov, G Kucherov Journal of Discrete Algorithms 1 (1), 159-186, 2000	108	2000
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing K Břinda, A Callendrello, KC Ma, DR MacFadden, T Charalampous, ... Nature microbiology 5 (3), 455-464, 2020	102	2020
Reconstructing a Hamiltonian cycle by querying the graph: Application to DNA physical mapping V Grebinski, G Kucherov Discrete Applied Mathematics 88 (1-3), 147-165, 1998	100	1998
Improved hit criteria for DNA local alignment L Noé, G Kucherov BMC bioinformatics 5, 1-9, 2004	99	2004
Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov Algorithms for Molecular Biology 9, 1-10, 2014	90	2014
Multiseed lossless filtration G Kucherov, L Noé, M Roytberg IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (1), 51-61, 2005	83	2005
Combinatorial search on graphs motivated by bioinformatics applications: A brief survey M Bouvel, V Grebinski, G Kucherov Graph-Theoretic Concepts in Computer Science: 31st International Workshop …, 2005	81	2005
Searching for gapped palindromes R Kolpakov, G Kucherov Theoretical Computer Science 410 (51), 5365-5373, 2009	74	2009
Finding approximate repetitions under Hamming distance R Kolpakov, G Kucherov Theoretical Computer Science 303 (1), 135-156, 2003	72	2003
Matching a set of strings with variable length don't cares G Kucherov, M Rusinowitch Theoretical Computer Science 178 (1-2), 129-154, 1997	64	1997
Using cascading Bloom filters to improve the memory usage for de Brujin graphs K Salikhov, G Sacomoto, G Kucherov International Workshop on Algorithms in Bioinformatics, 364-376, 2013	62	2013

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