| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1227 | 2018 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 584 | 2019 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 581 | 2020 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 502 | 2021 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 383 | 2020 |
| Allele-specific chromatin recruitment and therapeutic vulnerabilities of ESR1 activating mutations R Jeselsohn, JS Bergholz, M Pun, MI Cornwell, W Liu, A Nardone, T Xiao, ... Cancer cell 33 (2), 173-186. e5, 2018 | 273 | 2018 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 264 | 2021 |
| Integrated proteogenomic characterization across major histological types of pediatric brain cancer F Petralia, N Tignor, B Reva, M Koptyra, S Chowdhury, D Rykunov, A Krek, ... Cell 183 (7), 1962-1985. e31, 2020 | 258 | 2020 |
| Platelets contribute to disease severity in COVID‐19 TJ Barrett, S Bilaloglu, M Cornwell, HM Burgess, VW Virginio, K Drenkova, ... Journal of Thrombosis and Haemostasis 19 (12), 3139-3153, 2021 | 195 | 2021 |
| VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis MI Cornwell, M Vangala, L Taing, Z Herbert, J Köster, B Li, H Sun, T Li, ... BMC bioinformatics 19, 1-14, 2018 | 191 | 2018 |
| Embryonic transcription factor SOX9 drives breast cancer endocrine resistance R Jeselsohn, MI Cornwell, M Pun, G Buchwalter, M Nguyen, C Bango, ... Proceedings of the National Academy of Sciences 114 (22), E4482-E4491, 2017 | 118 | 2017 |
| Platelets amplify endotheliopathy in COVID-19 TJ Barrett, MI Cornwell, K Myndzar, CC Rolling, Y Xia, K Drenkova, ... Science Advances 7 (37), eabh2434, 2021 | 95 | 2021 |
| Impact of a pre-operative exercise intervention on breast cancer proliferation and gene expression: results from the pre-operative health and body (PreHAB) study JA Ligibel, D Dillon, A Giobbie-Hurder, A McTiernan, E Frank, MI Cornwell, ... Clinical Cancer Research 25 (17), 5398-5406, 2019 | 89 | 2019 |
| NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains P Lhoumaud, S Badri, J Rodriguez-Hernaez, T Sakellaropoulos, G Sethia, ... Nature communications 10 (1), 4843, 2019 | 78 | 2019 |
| Unraveling the clinicopathological features driving the emergence of ESR1 mutations in metastatic breast cancer Y Kuang, B Siddiqui, J Hu, M Pun, MI Cornwell, G Buchwalter, ... npj Breast Cancer 4 (1), 22, 2018 | 51 | 2018 |
| EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation P Lhoumaud, G Sethia, F Izzo, T Sakellaropoulos, V Snetkova, S Vidal, ... Genome biology 20, 1-12, 2019 | 37 | 2019 |
| Long noncoding RNA CHROMR regulates antiviral immunity in humans C van Solingen, Y Cyr, KR Scacalossi, M de Vries, TJ Barrett, A de Jong, ... Proceedings of the National Academy of Sciences 119 (37), e2210321119, 2022 | 29 | 2022 |
| Manipulating the 3D organization of the largest synthetic yeast chromosome W Zhang, L Lazar-Stefanita, H Yamashita, MJ Shen, LA Mitchell, ... Molecular Cell 83 (23), 4424-4437. e5, 2023 | 26 | 2023 |
| Gene expression signature in patients with symptomatic peripheral artery disease JD Newman, MIG Cornwell, H Zhou, C Rockman, A Heguy, Y Suarez, ... Arteriosclerosis, thrombosis, and vascular biology 41 (4), 1521-1533, 2021 | 20 | 2021 |
| P2Y12 inhibition suppresses proinflammatory platelet–monocyte interactions CC Rolling, MA Sowa, TT Wang, MI Cornwell, K Myndzar, T Schwartz, ... Thrombosis and haemostasis 123 (02), 231-244, 2023 | 19 | 2023 |
