Walter L. Ruzzo

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Zizhen YaoAllen Institute for Brain ScienceVerified email at alleninstitute.org
Ronald BreakerYale UniversityVerified email at yale.edu
Martin TompaUniversity of WashingtonVerified email at cs.washington.edu
Ka Yee YeungProfessor, School of Engineering and Technology, University of Washington-Tacoma.Verified email at uw.edu
Daniel C. JonesGraduate Student, Computer Science and Engineering, University of WashingtonVerified email at cs.washington.edu
Jeffrey E. BarrickDepartment of Molecular Biosciences, The University of Texas at AustinVerified email at cm.utexas.edu
Prabhakar RaghavanGoogleVerified email at google.com
Allan BorodinProfessor of Computer Science, University of TorontoVerified email at cs.toronto.edu
Jeffrey UllmanProfessor of Computer Science, Stanford UniversityVerified email at stanford.edu
Xinxia PengNorth Carolina State UniversityVerified email at ncsu.edu
Scott HauckUniversity of WashingtonVerified email at uw.edu
Deepayan SarkarAssociate Professor at Indian Statistical Institute, Delhi, IndiaVerified email at isid.ac.in
Yuliang WangStaff Data Scientist, VerilyVerified email at google.com
Niels TommerupProfessor in Medical Genetics, University of CopenhagenVerified email at sund.ku.dk
Adrian E. RafteryProfessor of Statistics and Sociology, University of WashingtonVerified email at uw.edu
Stefan Ernst SeemannUniversity of CopenhagenVerified email at rth.dk
Silvère van der MaarelProfessor of Medical Epigenetics, Head of Department, Human Genetics, Leiden University MedicalVerified email at lumc.nl
jerald radichfred hutchinson cancer research centerVerified email at fredhutch.org
Stephen CookDepartment of Computer Science, University of TorontoVerified email at cs.toronto.edu
Paul BeameProfessor of Computer Science and Engineering, University of WashingtonVerified email at cs.washington.edu

Walter L. Ruzzo

Professor, University of Washington

Verified email at uw.edu - Homepage

Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Protection in operating systems MA Harrison, WL Ruzzo, JD Ullman Communications of the ACM 19 (8), 461-471, 1976	1825	1976
Principal component analysis for clustering gene expression data KY Yeung, WL Ruzzo Bioinformatics 17 (9), 763-774, 2001	1495	2001
Model-based clustering and data transformations for gene expression data C Fraley, A Murua, AE Raftery, WL Ruzzo, KY Yeung, C Fraley, A Murua, ... Bioinformatics, 2001	1207	2001
Validating clustering for gene expression data KY Yeung, DR Haynor, WL Ruzzo Bioinformatics 17 (4), 309-318, 2001	953	2001
Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ... PLoS biology 4 (9), e286, 2006	876	2006
Limits to parallel computation: P-completeness theory R Greenlaw, HJ Hoover, WL Ruzzo Oxford University Press, USA, 1995	832	1995
The electrical resistance of a graph captures its commute and cover times AK Chandra, P Raghavan, WL Ruzzo, R Smolensky Proceedings of the twenty-first annual ACM symposium on Theory of computing …, 1989	810	1989
A glycine-dependent riboswitch that uses cooperative binding to control gene expression M Mandal, M Lee, JE Barrick, Z Weinberg, GM Emilsson, WL Ruzzo, ... Science 306 (5694), 275-279, 2004	660	2004
On uniform circuit complexity WL Ruzzo Journal of Computer and System Sciences 22 (3), 365-383, 1981	616	1981
Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming Y Cao, Z Yao, D Sarkar, M Lawrence, GJ Sanchez, MH Parker, ... Developmental cell 18 (4), 662-674, 2010	546	2010
DUX4 activates germline genes, retroelements, and immune mediators: implications for facioscapulohumeral dystrophy LN Geng, Z Yao, L Snider, AP Fong, JN Cech, JM Young, ... Developmental cell 22 (1), 38-51, 2012	499	2012
CMfinder—a covariance model based RNA motif finding algorithm Z Yao, Z Weinberg, WL Ruzzo Bioinformatics 22 (4), 445-452, 2006	443	2006
MicroRNA discovery and profiling in human embryonic stem cells by deep sequencing of small RNA libraries M Bar, SK Wyman, BR Fritz, J Qi, KS Garg, RK Parkin, EM Kroh, ... Stem cells 26 (10), 2496-2505, 2008	416	2008
Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline Z Weinberg, JE Barrick, Z Yao, A Roth, JN Kim, J Gore, JX Wang, ER Lee, ... Nucleic acids research 35 (14), 4809-4819, 2007	415	2007
Tree-size bounded alternation WL Ruzzo Proceedings of the eleventh annual ACM symposium on Theory of computing, 352-359, 1979	357	1979
Details of the adjusted rand index and clustering algorithms, supplement to the paper an empirical study on principal component analysis for clustering gene expression data KY Yeung, WL Ruzzo Bioinformatics 17 (9), 763-774, 2001	355	2001
An improved context-free recognizer SL Graham, M Harrison, WL Ruzzo ACM Transactions on Programming Languages and Systems (TOPLAS) 2 (3), 415-462, 1980	333	1980
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter JE Barrick, N Sudarsan, Z Weinberg, WL Ruzzo, RR Breaker Rna 11 (5), 774-784, 2005	304	2005
Let-7 family of microRNA is required for maturation and adult-like metabolism in stem cell-derived cardiomyocytes KT Kuppusamy, DC Jones, H Sperber, A Madan, KA Fischer, ... Proceedings of the National Academy of Sciences 112 (21), E2785-E2794, 2015	291	2015
Improved gene selection for classification of microarrays J Jäger, R Sengupta, WL Ruzzo Biocomputing 2003, 53-64, 2002	276	2002

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