| The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity Z Zhou, NF Alikhan, K Mohamed, Y Fan, M Achtman, D Brown, ... Genome research 30 (1), 138-152, 2020 | 812* | 2020 |
| Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica M Achtman, J Wain, FX Weill, S Nair, Z Zhou, V Sangal, MG Krauland, ... PLoS pathogens 8 (6), e1002776, 2012 | 807 | 2012 |
| GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens Z Zhou, NF Alikhan, MJ Sergeant, N Luhmann, C Vaz, AP Francisco, ... Genome research 28 (9), 1395-1404, 2018 | 785 | 2018 |
| Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia PF Dunfield, A Yuryev, P Senin, AV Smirnova, MB Stott, S Hou, B Ly, ... Nature 450 (7171), 879-882, 2007 | 726 | 2007 |
| A genomic overview of the population structure of Salmonella NF Alikhan, Z Zhou, MJ Sergeant, M Achtman PLoS genetics 14 (4), e1007261, 2018 | 564 | 2018 |
| A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic MTG Holden, LY Hsu, K Kurt, LA Weinert, AE Mather, SR Harris, ... Genome research 23 (4), 653-664, 2013 | 533 | 2013 |
| Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia S Hou, KS Makarova, JHW Saw, P Senin, BV Ly, Z Zhou, Y Ren, J Wang, ... Biology Direct 3, 1-25, 2008 | 264 | 2008 |
| Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe GL Kay, MJ Sergeant, Z Zhou, JZM Chan, A Millard, J Quick, I Szikossy, ... Nature communications 6 (1), 6717, 2015 | 204 | 2015 |
| Complete Genome Sequence of Enterobacter cloacae subsp. cloacae Type Strain ATCC 13047 Y Ren, Y Ren, Z Zhou, X Guo, Y Li, L Feng, L Wang Journal of bacteriology 192 (9), 2463-2464, 2010 | 200 | 2010 |
| Comparative analysis of core genome MLST and SNP typing within a European Salmonella serovar Enteritidis outbreak ME Pearce, NF Alikhan, TJ Dallman, Z Zhou, K Grant, MCJ Maiden International journal of food microbiology 274, 1-11, 2018 | 199 | 2018 |
| A recalibrated molecular clock and independent origins for the cholera pandemic clones L Feng, PR Reeves, R Lan, Y Ren, C Gao, Z Zhou, Y Ren, J Cheng, ... PloS one 3 (12), e4053, 2008 | 171 | 2008 |
| Clinical, Experimental, and Genomic Differences between Intermediately Pathogenic, Highly Pathogenic, and Epidemic Streptococcus suis C Ye, H Zheng, J Zhang, H Jing, L Wang, Y Xiong, W Wang, Z Zhou, ... The Journal of infectious diseases 199 (1), 97-107, 2009 | 163 | 2009 |
| Emergence of a New Multidrug-Resistant Serotype X Variant in an Epidemic Clone of Shigella flexneri C Ye, R Lan, S Xia, J Zhang, Q Sun, S Zhang, H Jing, L Wang, Z Li, ... Journal of clinical microbiology 48 (2), 419-426, 2010 | 149 | 2010 |
| Derivation of Escherichia coli O157: H7 from its O55: H7 precursor Z Zhou, X Li, B Liu, L Beutin, J Xu, Y Ren, L Feng, R Lan, PR Reeves, ... PloS one 5 (1), e8700, 2010 | 148 | 2010 |
| Rates of mutation and host transmission for an Escherichia coli clone over 3 years PR Reeves, B Liu, Z Zhou, D Li, D Guo, Y Ren, C Clabots, R Lan, ... PloS one 6 (10), e26907, 2011 | 145 | 2011 |
| Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using deep RNA sequencing J Xiong, X Lu, Z Zhou, Y Chang, D Yuan, M Tian, Z Zhou, L Wang, C Fu, ... PloS one 7 (2), e30630, 2012 | 132 | 2012 |
| Comparative genomics reveals a deep-sea sediment-adapted life style of Pseudoalteromonas sp. SM9913 QL Qin, Y Li, YJ Zhang, ZM Zhou, WX Zhang, XL Chen, XY Zhang, ... The ISME Journal 5 (2), 274-284, 2011 | 132 | 2011 |
| Genomic Sequencing Reveals Regulatory Mutations and Recombinational Events in the Widely Used MC4100 Lineage of Escherichia coli K-12 T Ferenci, Z Zhou, T Betteridge, Y Ren, Y Liu, L Feng, PR Reeves, ... Journal of bacteriology 191 (12), 4025-4029, 2009 | 124 | 2009 |
| Complete Genome Sequence of the Probiotic Lactobacillus plantarum ST-III Y Wang, C Chen, L Ai, F Zhou, Z Zhou, L Wang, H Zhang, W Chen, B Guo Journal of Bacteriology 193 (1), 313-314, 2011 | 118 | 2011 |
| Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever Z Zhou, A McCann, FX Weill, C Blin, S Nair, J Wain, G Dougan, ... PNAS 111 (33), 12199-12204, 2014 | 116 | 2014 |
Mark Achtman FRSemeritus Professor University of Warwick, previously University College Cork and Max-PlanckVerified email at warwick.ac.uk