Yu Zhang

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Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityVerified email at psu.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaVerified email at bx.psu.edu
Belinda Giardinecomputer programmer, Penn State UniversityVerified email at bx.psu.edu
James TaylorProfessor of Biology and Computer Science, Johns Hopkins UniversityVerified email at jhu.edu
Cheryl A. Keller, PhDThe Pennsylvania State UniversityVerified email at psu.edu
Stephan C. SchusterReseach Director and Chair in Genomics, SCELSE, Nanyang Technological University SingaporeVerified email at ntu.edu.sg
Chun Kit KwokAssociate Professor, Department of Chemistry, City University of Hong KongVerified email at cityu.edu.hk
Philip BevilacquaProfessor of Chemistry, The Pennsylvania State UniversityVerified email at psu.edu
Yin TangYale UniversityVerified email at yale.edu
Yiliang DingGroup Leader, Department of Cell and Developmental Biology, John Innes Centre, UKVerified email at jic.ac.uk
Giltae SongAssociate Professor, Pusan National University, South KoreaVerified email at pusan.ac.kr
Yong ChengSt.Jude Children's Research HospitalVerified email at stjude.org
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesVerified email at psu.edu
Chris MorrisseyDNAnexusVerified email at berkeley.edu
Adam SiepelSimons Center for Quantitative Biology, Cold Spring Harbor LaboratoryVerified email at cshl.edu
Tomas VinarComenius University in BratislavaVerified email at fmph.uniba.sk
Aakrosh RatanUniversity of VirginiaVerified email at bx.psu.edu

Yu Zhang

Associate Professor of Statistics, The Pennsylvania State University

Verified email at psu.edu - Homepage

Computational Biology Method Development


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005	2620	2005
In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696-700, 2014	853	2014
Bayesian inference of epistatic interactions in case-control studies Y Zhang, JS Liu Nature genetics 39 (9), 1167-1173, 2007	599	2007
Complete Khoisan and Bantu genomes from southern Africa SC Schuster, W Miller, A Ratan, LP Tomsho, B Giardine, LR Kasson, ... Nature 463 (7283), 943-947, 2010	545	2010
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) W Miller, VM Hayes, A Ratan, DC Petersen, NE Wittekindt, J Miller, ... Proceedings of the National Academy of Sciences 108 (30), 12348-12353, 2011	278	2011
The changing mouse embryo transcriptome at whole tissue and single-cell resolution P He, BA Williams, D Trout, GK Marinov, H Amrhein, L Berghella, ST Goh, ... Nature 583 (7818), 760-767, 2020	154	2020
Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration W Wu, Y Cheng, CA Keller, J Ernst, SA Kumar, T Mishra, C Morrissey, ... Genome research 21 (10), 1659-1671, 2011	150	2011
Alignment of optical maps A Valouev, L Li, YC Liu, DC Schwartz, Y Yang, Y Zhang, MS Waterman Journal of Computational Biology 13 (2), 442-462, 2006	113	2006
Jointly characterizing epigenetic dynamics across multiple human cell types Y Zhang, L An, F Yue, RC Hardison Nucleic acids research 44 (14), 6721-6731, 2016	101	2016
PheWAS and beyond: the landscape of associations with medical diagnoses and clinical measures across 38,662 individuals from Geisinger A Verma, A Lucas, SS Verma, Y Zhang, N Josyula, A Khan, DN Hartzel, ... The American Journal of Human Genetics 102 (4), 592-608, 2018	82	2018
OnTAD: hierarchical domain structure reveals the divergence of activity among TADs and boundaries L An, T Yang, J Yang, J Nuebler, G Xiang, RC Hardison, Q Li, Y Zhang Genome biology 20, 1-16, 2019	76	2019
Human-disease phenotype map derived from PheWAS across 38,682 individuals A Verma, L Bang, JE Miller, Y Zhang, MTM Lee, Y Zhang, ... The American Journal of Human Genetics 104 (1), 55-64, 2019	63	2019
Calling SNPs without a reference sequence A Ratan, Y Zhang, VM Hayes, SC Schuster, W Miller BMC bioinformatics 11, 1-13, 2010	62	2010
A novel bayesian graphical model for genome‐wide multi‐SNP association mapping Y Zhang Genetic epidemiology 36 (1), 36-47, 2012	59	2012
Accurate and reproducible functional maps in 127 human cell types via 2D genome segmentation Y Zhang, RC Hardison Nucleic acids research 45 (17), 9823-9836, 2017	53	2017
An Eulerian path approach to global multiple alignment for DNA sequences Y Zhang, MS Waterman Journal of Computational Biology 10 (6), 803-819, 2003	48	2003
An Eulerian path approach to local multiple alignment for DNA sequences Y Zhang, MS Waterman Proceedings of the National Academy of Sciences 102 (5), 1285-1290, 2005	44	2005
Refinement of optical map assemblies A Valouev, Y Zhang, DC Schwartz, MS Waterman Bioinformatics 22 (10), 1217-1224, 2006	43	2006
An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis G Xiang, CA Keller, E Heuston, BM Giardine, L An, AQ Wixom, A Miller, ... Genome research 30 (3), 472-484, 2020	42	2020
Optimization methods for selecting founder individuals for captive breeding or reintroduction of endangered species W Miller, SJ Wright, Y Zhang, SC Schuster, VM Hayes Biocomputing 2010, 43-53, 2010	38	2010

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