| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ... Nature 583 (7816), 459-468, 2020 | 4754 | 2020 |
| The translational landscape of the human heart S van Heesch, F Witte, V Schneider-Lunitz, JF Schulz, E Adami, AB Faber, ... Cell 178 (1), 242-260. e29, 2019 | 526 | 2019 |
| Detecting actively translated open reading frames in ribosome profiling data L Calviello, N Mukherjee, E Wyler, H Zauber, A Hirsekorn, M Selbach, ... Nature methods 13 (2), 165-170, 2016 | 429 | 2016 |
| Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes C Chong, M Müller, HS Pak, D Harnett, F Huber, D Grun, M Leleu, ... Nature communications 11 (1), 1293, 2020 | 278 | 2020 |
| Extensive identification and analysis of conserved small ORFs in animals SD Mackowiak, H Zauber, C Bielow, D Thiel, K Kutz, L Calviello, ... Genome biology 16, 1-21, 2015 | 246 | 2015 |
| Super-resolution ribosome profiling reveals unannotated translation events in Arabidopsis PY Hsu, L Calviello, HYL Wu, FW Li, CJ Rothfels, U Ohler, PN Benfey Proceedings of the National Academy of Sciences 113 (45), E7126-E7135, 2016 | 245 | 2016 |
| RNA localization is a key determinant of neurite-enriched proteome A Zappulo, D Van Den Bruck, C Ciolli Mattioli, V Franke, K Imami, ... Nature communications 8 (1), 583, 2017 | 217 | 2017 |
| Integrative classification of human coding and noncoding genes through RNA metabolism profiles N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler Nature structural & molecular biology 24 (1), 86-96, 2017 | 186 | 2017 |
| Standardized annotation of translated open reading frames JM Mudge, J Ruiz-Orera, JR Prensner, MA Brunet, F Calvet, I Jungreis, ... Nature biotechnology 40 (7), 994-999, 2022 | 162 | 2022 |
| Beyond read-counts: Ribo-seq data analysis to understand the functions of the transcriptome L Calviello, U Ohler Trends in Genetics 33 (10), 728-744, 2017 | 133 | 2017 |
| DDX3 depletion represses translation of mRNAs with complex 5′ UTRs L Calviello, S Venkataramanan, KJ Rogowski, E Wyler, K Wilkins, ... Nucleic acids research 49 (9), 5336-5350, 2021 | 103 | 2021 |
| DDX3X and DDX3Y are redundant in protein synthesis S Venkataramanan, M Gadek, L Calviello, K Wilkins, SN Floor Rna 27 (12), 1577-1588, 2021 | 62 | 2021 |
| Quantification of translation uncovers the functions of the alternative transcriptome L Calviello, A Hirsekorn, U Ohler Nature structural & molecular biology 27 (8), 717-725, 2020 | 53 | 2020 |
| Aberrant cortical development is driven by impaired cell cycle and translational control in a DDX3X syndrome model ML Hoye, L Calviello, AJ Poff, NE Ejimogu, CR Newman, MD Montgomery, ... Elife 11, e78203, 2022 | 45 | 2022 |
| Ribo-seQC: comprehensive analysis of cytoplasmic and organellar ribosome profiling data L Calviello, D Sydow, D Harnett, U Ohler BioRxiv, 601468, 2019 | 29 | 2019 |
| Quasi-cellular systems: stochastic simulation analysis at nanoscale range L Calviello, P Stano, F Mavelli, PL Luisi, R Marangoni BMC bioinformatics 14, 1-13, 2013 | 26 | 2013 |
| Compromised nonsense-mediated RNA decay results in truncated RNA-binding protein production upon DUX4 expression AE Campbell, MC Dyle, R Albanese, T Matheny, K Sudheendran, ... Cell reports 42 (6), 2023 | 15* | 2023 |
| Control of ribosomal protein synthesis by the Microprocessor complex X Jiang, A Prabhakar, SM Van der Voorn, P Ghatpande, B Celona, ... Science signaling 14 (671), eabd2639, 2021 | 10 | 2021 |
| A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X Z Jowhar, A Xu, S Venkataramanan, F Dossena, ML Hoye, DL Silver, ... Molecular Systems Biology 20 (3), 276-290, 2024 | 3 | 2024 |
| Genome-wide analysis of actively translated open reading frames using RiboTaper/ORFquant D Harnett, E Meerdink, L Calviello, D Sydow, U Ohler Ribosome Profiling: Methods and Protocols, 331-346, 2021 | 3 | 2021 |