Articles with public access mandates - Yaping LiuLearn more
Not available anywhere: 1
Reduced Nephron Endowment in Six2-TGCtg Mice Is Due to Six3 Misexpression by Aberrant Enhancer–Promoter Interactions in the Transgene
AJ Perl, H Liu, M Hass, N Adhikari, P Chaturvedi, YC Hu, R Jiang, Y Liu, ...
Journal of the American Society of Nephrology, 10.1681, 2024
Mandates: US National Institutes of Health
Available somewhere: 25
Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, National …
Genetic effects on gene expression across human tissues
GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ...
Nature 550 (7675), 204-213, 2017
Mandates: US National Science Foundation, US National Institutes of Health, Natural …
Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
Mandates: US Department of Energy, US National Institutes of Health, UK Biotechnology …
Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics
AN Barbeira, SP Dickinson, R Bonazzola, J Zheng, HE Wheeler, ...
Nature communications 9 (1), 1825, 2018
Mandates: US National Institutes of Health, Wellcome Trust
Landscape of X chromosome inactivation across human tissues
T Tukiainen, AC Villani, A Yen, MA Rivas, JL Marshall, R Satija, M Aguirre, ...
Nature 550 (7675), 244-248, 2017
Mandates: US National Institutes of Health, Academy of Finland
Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
BP Berman, DJ Weisenberger, JF Aman, T Hinoue, Z Ramjan, Y Liu, ...
Nature genetics 44 (1), 40-46, 2012
Mandates: US National Institutes of Health
Dynamic landscape and regulation of RNA editing in mammals
MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ...
Nature 550 (7675), 249-254, 2017
Mandates: US National Institutes of Health, National Health and Medical Research …
Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
TK Kelly*, Y Liu*, FD Lay, G Liang, BP Berman, PA Jones
Genome research 22 (12), 2497-2506, 2012
Mandates: US National Institutes of Health
Using an atlas of gene regulation across 44 human tissues to inform complex disease-and trait-associated variation
ER Gamazon, AV Segrè, M Van De Bunt, X Wen, HS Xi, F Hormozdiari, ...
Nature genetics 50 (7), 956-967, 2018
Mandates: Swiss National Science Foundation, US National Institutes of Health, UK …
Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data
Y Liu, KD Siegmund, PW Laird, BP Berman
Genome biology 13, 1-14, 2012
Mandates: US National Institutes of Health
The impact of rare variation on gene expression across tissues
X Li, Y Kim, EK Tsang, JR Davis, FN Damani, C Chiang, GT Hess, ...
Nature 550 (7675), 239-243, 2017
Mandates: US National Science Foundation, US National Institutes of Health, Natural …
Estimating the causal tissues for complex traits and diseases
H Ongen, AA Brown, O Delaneau, NI Panousis, AC Nica, ...
Nature genetics 49 (12), 1676-1683, 2017
Mandates: Swiss National Science Foundation, US National Institutes of Health …
Joint profiling of DNA methylation and chromatin architecture in single cells
G Li*, Y Liu*, Y Zhang, N Kubo, M Yu, R Fang, M Kellis, B Ren
Nature methods 16 (10), 991-993, 2019
Mandates: US National Institutes of Health
Co-expression networks reveal the tissue-specific regulation of transcription and splicing
A Saha, Y Kim, ADH Gewirtz, B Jo, C Gao, IC McDowell, BE Engelhardt, ...
Genome research 27 (11), 1843-1858, 2017
Mandates: US National Institutes of Health, Wellcome Trust
Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA
N Wan, D Weinberg, TY Liu, K Niehaus, EA Ariazi, D Delubac, A Kannan, ...
BMC cancer 19, 1-10, 2019
Mandates: US National Institutes of Health
Enhancing GTEx by bridging the gaps between genotype, gene expression, and disease
Nature genetics 49 (12), 1664-1670, 2017
Mandates: US National Institutes of Health, Natural Sciences and Engineering Research …
The role of DNA methylation in directing the functional organization of the cancer epigenome
FD Lay*, Y Liu*, TK Kelly, H Witt, PJ Farnham, PA Jones, BP Berman
Genome research 25 (4), 467-477, 2015
Mandates: US National Institutes of Health
Perspectives on ENCODE
MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ...
Nature 583 (7818), 693-698, 2020
Mandates: US Department of Energy, US National Institutes of Health, UK Biotechnology …
Identifying cis-mediators for trans-eQTLs across many human tissues using genomic mediation analysis
F Yang, J Wang, BL Pierce, LS Chen, F Aguet, KG Ardlie, BB Cummings, ...
Genome research 27 (11), 1859-1871, 2017
Mandates: US National Institutes of Health, Wellcome Trust
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