Articles with public access mandates - Dan SchnellLearn more
Available somewhere: 16
DoubletDecon: deconvoluting doublets from single-cell RNA-sequencing data
EAK DePasquale, DJ Schnell, PJ Van Camp, Í Valiente-Alandí, BC Blaxall, ...
Cell reports 29 (6), 1718-1727. e8, 2019
Mandates: US National Institutes of Health
cellHarmony: cell-level matching and holistic comparison of single-cell transcriptomes
EAK DePasquale, D Schnell, P Dexheimer, K Ferchen, S Hay, K Chetal, ...
Nucleic acids research 47 (21), e138-e138, 2019
Mandates: US National Institutes of Health
A specialized population of Periostin-expressing cardiac fibroblasts contributes to postnatal cardiomyocyte maturation and innervation
L Hortells, I Valiente-Alandi, ZM Thomas, EJ Agnew, DJ Schnell, AJ York, ...
Proceedings of the National Academy of Sciences 117 (35), 21469-21479, 2020
Mandates: US National Institutes of Health, American Heart Association
Resolving single-cell heterogeneity from hundreds of thousands of cells through sequential hybrid clustering and NMF
M Venkatasubramanian, K Chetal, DJ Schnell, G Atluri, N Salomonis
Bioinformatics 36 (12), 3773-3780, 2020
Mandates: US National Institutes of Health
Monocyte and bone marrow macrophage transcriptional phenotypes in systemic juvenile idiopathic arthritis reveal TRIM8 as a mediator of IFN-γ hyper-responsiveness and risk for …
GS Schulert, AV Pickering, T Do, S Dhakal, N Fall, D Schnell, ...
Annals of the Rheumatic Diseases 80 (5), 617-625, 2021
Mandates: US National Institutes of Health, Australian Research Council
Integration of transcriptomic and proteomic data identifies biological functions in cell populations from human infant lung
Y Du, GC Clair, D Al Alam, S Danopoulos, D Schnell, JA Kitzmiller, ...
American Journal of Physiology-Lung Cellular and Molecular Physiology 317 (3 …, 2019
Mandates: US Department of Energy, US National Institutes of Health
LungMAP portal ecosystem: Systems-level exploration of the lung
N Gaddis, J Fortriede, M Guo, EE Bardes, M Kouril, S Tabar, K Burns, ...
American Journal of Respiratory Cell and Molecular Biology 70 (2), 129-139, 2024
Mandates: US Department of Energy, US National Institutes of Health
DoubletDecon: cell-state aware removal of single-cell RNA-seq doublets
EAK DePasquale, DJ Schnell, Í Valiente-Alandí, BC Blaxall, HL Grimes, ...
BioRxiv, 364810, 2018
Mandates: US National Institutes of Health
Retinoid X receptor promotes hematopoietic stem cell fitness and quiescence and preserves hematopoietic homeostasis
MP Menéndez-Gutiérrez, J Porcuna, R Nayak, A Paredes, H Niu, V Núñez, ...
Blood 141 (6), 592-608, 2023
Mandates: US National Institutes of Health, Government of Spain
Protocol for identification and removal of doublets with DoubletDecon
EAK DePasquale, D Schnell, K Chetal, N Salomonis
STAR protocols 1 (2), 100085, 2020
Mandates: US National Institutes of Health
CellDrift: inferring perturbation responses in temporally sampled single-cell data
K Jin, D Schnell, G Li, N Salomonis, VBS Prasath, R Szczesniak, ...
Briefings in Bioinformatics 23 (5), bbac324, 2022
Mandates: US National Institutes of Health
Matrix and analysis metadata standards (MAMS) to facilitate harmonization and reproducibility of single-cell data
Y Wang, I Sarfraz, WK Teh, A Sokolov, BR Herb, HH Creasy, I Virshup, ...
bioRxiv, 2023
Mandates: US National Institutes of Health, Wellcome Trust
Population-level single-cell genomics reveals conserved gene programs in systemic juvenile idiopathic arthritis
EL Verweyen, K Thakkar, S Dhakal, E Baker, K Chetal, D Schnell, ...
The Journal of Clinical Investigation 133 (22), 2023
Mandates: US National Institutes of Health, German Research Foundation, Chan …
Fetal maturation revealed by amniotic fluid cell-free transcriptome in rhesus macaques
AF Schmidt, DJ Schnell, KP Eaton, K Chetal, PS Kannan, LA Miller, ...
JCI insight 7 (18), 2022
Mandates: Bill & Melinda Gates Foundation, US National Institutes of Health
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data
I Sarfraz, Y Wang, A Shastry, WK Teh, A Sokolov, BR Herb, HH Creasy, ...
Genome Biology 25 (1), 205, 2024
Mandates: Wellcome Trust, Chan Zuckerberg Initiative
After the Infection: A Survey of Pathogens and Non-communicable Human Disease
M Lape, D Schnell, S Parameswaran, K Ernst, N Salomonis, LJ Martin, ...
medRxiv, 2023
Mandates: US National Institutes of Health
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