Aoife McLysaght

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Takashi MakinoGraduate School of Life Sciences, Tohoku UniversityVerified email at tohoku.ac.jp
Nikolaos VakirlisHellenic Pasteur InstituteVerified email at pasteur.gr
Kenneth H. WolfeProfessor of Genomic Evolution, University College DublinVerified email at ucd.ie
Karsten HokampBioinformatics Research Officer, Smurfit Institute of Genetics, Trinity College DublinVerified email at tcd.ie
Anne-Ruxandra CarvunisUniversity of PittsburghVerified email at pitt.edu
Anthony K. RedmondAd Astra Fellow, Assistant Professor, School of Medicine, University College DublinVerified email at ucd.ie
Alan M. RiceUCD National Virus Reference LaboratoryVerified email at ucd.ie
Laurence D HurstUniversity of BathVerified email at bath.ac.uk
Yoichiro NakataniOsaka UniversityVerified email at cgi.med.osaka-u.ac.jp
Brandon GautDistinguished Professor of Ecology and Evolutionary Biology, UC IrvineVerified email at uci.edu
Pierre BaldiProfessor, University of California, IrvineVerified email at ics.uci.edu
Gianluca PollastriAssociate Professor, University College DublinVerified email at ucd.ie
Zoe VanceUniversity of EdinburghVerified email at ed.ac.uk
Prashant ShingateBayer, SingaporeVerified email at bayer.com
Åsa Pérez-BercoffUniversity of New South WalesVerified email at unsw.edu.au
Gabriel MaraisCNRSVerified email at cnrs.fr
Stefan RothenburgUC DavisVerified email at ucdavis.edu
Anton EnrightProfessor of RNA Biology and Genomics, Pathology Dept., University of CambridgeVerified email at cam.ac.uk
Kevin MitchellAssociate Professor of Genetics and Neuroscience, Trinity College DublinVerified email at tcd.ie
David SankoffUniversity of OttawaVerified email at uottawa.ca

Aoife McLysaght

Chair of Evolutionary Genetics, Trinity College Dublin

Verified email at tcd.ie - Homepage

Molecular Evolution Comparative Genomics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Initial sequencing and analysis of the human genome US DOE Joint Genome Institute: Hawkins Trevor 4 Branscomb Elbert 4 Predki ... Nature 409 (6822), 860-921, 2001	25392	2001
Extensive genomic duplication during early chordate evolution A McLysaght, K Hokamp, KH Wolfe Nature genetics 31 (2), 200-204, 2002	651	2002
Porter: a new, accurate server for protein secondary structure prediction G Pollastri, A McLysaght Bioinformatics 21 (8), 1719-1720, 2005	593	2005
Recent de novo origin of human protein-coding genes DG Knowles, A McLysaght Genome research 19 (10), 1752-1759, 2009	346	2009
Ohnologs in the human genome are dosage balanced and frequently associated with disease T Makino, A McLysaght Proceedings of the National Academy of Sciences 107 (20), 9270, 2010	288	2010
Extensive gene gain associated with adaptive evolution of poxviruses A McLysaght, PF Baldi, BS Gaut Proceedings of the National Academy of Sciences 100 (26), 15655-15660, 2003	241	2003
Open questions in the study of de novo genes: what, how and why A McLysaght, LD Hurst Nature Reviews Genetics 17 (9), 567-578, 2016	227	2016
Mammalian X chromosome inactivation evolved as a dosage-compensation mechanism for dosage-sensitive genes on the X chromosome E Pessia, T Makino, M Bailly-Bechet, A McLysaght, GAB Marais Proceedings of the National Academy of Sciences 109 (14), 5346-5351, 2012	206	2012
New genes from non-coding sequence: the role of de novo protein-coding genes in eukaryotic evolutionary innovation A McLysaght, D Guerzoni Philosophical Transactions of the Royal Society B: Biological Sciences 370 …, 2015	187	2015
Dosage sensitivity is a major determinant of human copy number variant pathogenicity AM Rice, A McLysaght Nature communications 8 (1), 14366, 2017	169	2017
A family of vertebrate-specific polycombs encoded by the LCOR/LCORL genes balance PRC2 subtype activities E Conway, E Jerman, E Healy, S Ito, D Holoch, G Oliviero, O Deevy, ... Molecular cell 70 (3), 408-421. e8, 2018	156	2018
A survey of host range genes in poxvirus genomes KA Bratke, A McLysaght, S Rothenburg Infection, Genetics and Evolution 14, 406-425, 2013	150	2013
Dosage-sensitive genes in evolution and disease AM Rice, A McLysaght BMC biology 15, 1-10, 2017	138	2017
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes N Vakirlis, AR Carvunis, A McLysaght elife 9, e53500, 2020	130	2020
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences N Vakirlis, O Acar, B Hsu, N Castilho Coelho, SB Van Oss, A Wacholder, ... Nature communications 11 (1), 781, 2020	118	2020
The complex relationship of gene duplication and essentiality T Makino, K Hokamp, A McLysaght Trends in genetics 25 (4), 152-155, 2009	111	2009
Reconstruction of proto-vertebrate, proto-cyclostome and proto-gnathostome genomes provides new insights into early vertebrate evolution Y Nakatani, P Shingate, V Ravi, NE Pillai, A Prasad, A McLysaght, ... Nature communications 12 (1), 4489, 2021	110	2021
Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding AK Redmond, A McLysaght Nature communications 12 (1), 1783, 2021	107	2021
The 2R hypothesis and the human genome sequence K Hokamp, A McLysaght, KH Wolfe Genome Evolution: Gene and Genome Duplications and the Origin of Novel Gene …, 2003	105	2003
Estimation of synteny conservation and genome compaction between pufferfish (Fugu) and human A McLysaght, AJ Enright, L Skrabanek, KH Wolfe Yeast 17 (1), 22-36, 2000	99	2000

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