Articles with public access mandates - Joseph GuhlinLearn more
Available somewhere: 19
Population genomics of the critically endangered kākāpō
N Dussex, T Van Der Valk, HE Morales, CW Wheat, D Díez-del-Molino, ...
Cell Genomics 1 (1), 2021
Mandates: Swiss National Science Foundation, US National Institutes of Health, Howard …
Exploring structural variation and gene family architecture with De Novo assemblies of 15 Medicago genomes
P Zhou, KAT Silverstein, T Ramaraj, J Guhlin, R Denny, J Liu, AD Farmer, ...
BMC genomics 18, 1-14, 2017
Mandates: US National Science Foundation
Select and resequence reveals relative fitness of bacteria in symbiotic and free-living environments
LT Burghardt, B Epstein, J Guhlin, MS Nelson, MR Taylor, ND Young, ...
Proceedings of the National Academy of Sciences 115 (10), 2425-2430, 2018
Mandates: US National Science Foundation, US Department of Agriculture
Detecting small plant peptides using SPADA (small peptide alignment discovery application)
P Zhou, KAT Silverstein, L Gao, JD Walton, S Nallu, J Guhlin, ND Young
BMC bioinformatics 14, 1-16, 2013
Mandates: US National Institutes of Health
Validating genome-wide association candidates controlling quantitative variation in nodulation
SJ Curtin, P Tiffin, J Guhlin, DI Trujillo, LT Burghardt, P Atkins, NJ Baltes, ...
Plant Physiology 173 (2), 921-931, 2017
Mandates: US National Science Foundation
Transcriptomic basis of genome by genome variation in a legume‐rhizobia mutualism
LT Burghardt, J Guhlin, CL Chun, J Liu, MJ Sadowsky, RM Stupar, ...
Molecular ecology 26 (21), 6122-6135, 2017
Mandates: US National Science Foundation
Expanding the conservation genomics toolbox: incorporating structural variants to enhance genomic studies for species of conservation concern
J Wold, KP Koepfli, SJ Galla, D Eccles, CJ Hogg, MF Le Lec, J Guhlin, ...
Molecular Ecology 30 (23), 5949-5965, 2021
Mandates: US National Science Foundation
Galba: genome annotation with miniprot and AUGUSTUS
T Brůna, H Li, J Guhlin, D Honsel, S Herbold, M Stanke, N Nenasheva, ...
BMC bioinformatics 24 (1), 327, 2023
Mandates: US Department of Energy, US National Institutes of Health, German Research …
Genome-Wide Association Analyses in the Model Rhizobium Ensifer meliloti
B Epstein, RAI Abou-Shanab, A Shamseldin, MR Taylor, J Guhlin, ...
MSphere 3 (5), 10.1128/msphere. 00386-18, 2018
Mandates: US National Science Foundation, US Department of Agriculture
The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements
M Nelson, J Guhlin, B Epstein, P Tiffin, MJ Sadowsky
Microbial genomics 4 (5), e000174, 2018
Mandates: US National Science Foundation, US Department of Agriculture
The Pacific Biosciences de novo assembled genome dataset from a parthenogenetic New Zealand wild population of the longhorned tick, Haemaphysalis longicornis Neumann, 1901
FD Guerrero, KG Bendele, N Ghaffari, J Guhlin, KR Gedye, KE Lawrence, ...
Data in brief 27, 104602, 2019
Mandates: US National Science Foundation, US Department of Agriculture
ODG: Omics database generator-a tool for generating, querying, and analyzing multi-omics comparative databases to facilitate biological understanding
J Guhlin, KAT Silverstein, P Zhou, P Tiffin, ND Young
BMC bioinformatics 18, 1-8, 2017
Mandates: US National Science Foundation
Hidden impacts of conservation management on fertility of the critically endangered kākāpō
A Digby, D Eason, A Catalina, M Lierz, S Galla, L Urban, MF Le Lec, ...
PeerJ 11, e14675, 2023
Mandates: US National Science Foundation, Ministry of Business Innovation and Employment
Germline progenitors and oocyte production in the honeybee queen ovary
G Cullen, JB Gilligan, JG Guhlin, PK Dearden
Genetics 225 (1), iyad138, 2023
Mandates: Ministry of Business Innovation and Employment
The genetic basis of the kākāpō structural color polymorphism suggests balancing selection by an extinct apex predator
L Urban, AW Santure, L Uddstrom, A Digby, D Vercoe, D Eason, J Crane, ...
PLoS biology 22 (9), e3002755, 2024
Mandates: European Commission
Chromosome-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus
SN Inwood, J Skelly, JG Guhlin, TWR Harrop, SL Goldson, PK Dearden
BMC genomics 24 (1), 440, 2023
Mandates: Ministry of Business Innovation and Employment
Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics
S Bailey, J Guhlin, DS Senanayake, P Scherer, P Brekke, JG Ewen, ...
Molecular ecology resources, 2023
Mandates: UK Research & Innovation, Ministry of Business Innovation and Employment
The ghost of selection past: evolution and conservation relevance of the kākāpō color polymorphism
L Urban, AW Santure, L Uddstrom, A Digby, D Vercoe, D Eason, J Crane, ...
bioRxiv, 2023.09. 25.559367, 2023
Mandates: Helmholtz Association, European Commission
Scaffold-level genome assemblies of two parasitoid biocontrol wasps reveal the parthenogenesis mechanism and an associated novel virus
SN Inwood, J Skelly, J Guhlin, T Harrop, S Goldson, PK Dearden
bioRxiv, 2023.05. 25.542369, 2023
Mandates: Ministry of Business Innovation and Employment
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