Ron Shamir

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Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Igor UlitskyWeizmann Institute of ScienceVerified email at weizmann.ac.il
Ran ElkonTel Aviv UniversityVerified email at tauex.tau.ac.il
Amos TanayWeizmann InstituteVerified email at weizmann.ac.il
David AmarStanford University, Tel Aviv UniversityVerified email at stanford.edu
Yosef ShilohTel Aviv UniversityVerified email at post.tau.ac.il
Haim KaplanSchool of Computer Science, Tel Aviv UniversityVerified email at post.tau.ac.il
Adi Maron-KatzPrincipal Scientist, Magnus Medical incVerified email at magnusmed.com
Yaron OrensteinComputer Science and Life Sciences, Bar-Ilan UniversityVerified email at biu.ac.il
Itsik Pe'erDepartment of Computer Science, Columbia UniversityVerified email at cs.columbia.edu
Amir Ben-DorSenior Scientist, Agilent LaboratoriesVerified email at agilent.com
Irit Gat-viksTel-Aviv UniversityVerified email at tauex.tau.ac.il
Eran HalperinUniversity of California, Los AngelesVerified email at cs.ucla.edu
Martin GolumbicProfessor of Computer Science, University of HaifaVerified email at cs.haifa.ac.il
martin kupiecProfessor of Genetics, Tel Aviv UniversityVerified email at post.tau.ac.il
Michal Ozery-FlatoResearch Staff Member at IBM ResearchVerified email at il.ibm.com
Louise C LaurentProfessor of Obstetrics, Gynecology, and Reproductive Sciences, UC San DiegoVerified email at health.ucsd.edu
David PellowUniversity of TorontoVerified email at utoronto.ca
Pavel PevznerUniversity of California at San DiegoVerified email at ucsd.edu
Zohar YakhiniFaculty Member, Computer Science at IDC HerzeliyaVerified email at idc.ac.il

Ron Shamir

Professor of Computer Science and Bioinformatics, Tel Aviv University

Verified email at tauex.tau.ac.il - Homepage

Bioinformatics computational biology algorithms digital medicine


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Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012	1875	2012
Clustering gene expression patterns A Ben-Dor, Z Yakhini Proceedings of the third annual international conference on Computational …, 1999	1856	1999
Modelling and analysis of gene regulatory networks G Karlebach, R Shamir Nature reviews Molecular cell biology 9 (10), 770-780, 2008	1570	2008
Network‐based prediction of protein function R Sharan, I Ulitsky, R Shamir Molecular systems biology 3 (1), 88, 2007	1325	2007
Discovering statistically significant biclusters in gene expression data A Tanay, R Sharan, R Shamir Bioinformatics 18 (suppl_1), S136-S144, 2002	1223	2002
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture LC Laurent, I Ulitsky, I Slavin, H Tran, A Schork, R Morey, C Lynch, ... Cell stem cell 8 (1), 106-118, 2011	1040	2011
Quantification of protein half-lives in the budding yeast proteome A Belle, A Tanay, L Bitincka, R Shamir, EK O’Shea Proceedings of the National Academy of Sciences 103 (35), 13004-13009, 2006	853	2006
A clustering algorithm based on graph connectivity E Hartuv, R Shamir Information processing letters 76 (4-6), 175-181, 2000	726	2000
CLICK: a clustering algorithm with applications to gene expression analysis R Sharan, R Shamir Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000	705	2000
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data A Tanay, R Sharan, M Kupiec, R Shamir Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004	511	2004
Multi-omic and multi-view clustering algorithms: review and cancer benchmark N Rappoport, R Shamir Nucleic acids research 46 (20), 10546-10562, 2018	496	2018
CLICK and EXPANDER: a system for clustering and visualizing gene expression data R Sharan, A Maron-Katz, R Shamir Bioinformatics 19 (14), 1787-1799, 2003	461	2003
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013	423	2013
Faster and simpler algorithm for sorting signed permutations by reversals H Kaplan, R Shamir, RE Tarjan Proceedings of the first annual international conference on Computational …, 1997	422	1997
Cluster graph modification problems R Shamir, R Sharan, D Tsur Discrete Applied Mathematics 144 (1-2), 173-182, 2004	418	2004
Regulatory networks define phenotypic classes of human stem cell lines FJ Müller, LC Laurent, D Kostka, I Ulitsky, R Williams, C Lu, IH Park, ... Nature 455 (7211), 401-405, 2008	403	2008
A fast algorithm for joint reconstruction of ancestral amino acid sequences T Pupko, I Pe, R Shamir, D Graur Molecular biology and evolution 17 (6), 890-896, 2000	399	2000
A global view of pleiotropy and phenotypically derived gene function in yeast AM Dudley, DM Janse, A Tanay, R Shamir, GMD Church Molecular systems biology 1 (1), 2005.0001, 2005	397	2005
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh Genome research 13 (5), 773-780, 2003	388	2003
EXPANDER – an integrative program suite for microarray data analysis R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ... BMC bioinformatics 6, 1-12, 2005	375	2005

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