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Shashank Sathe
Shashank Sathe
Verified email at ucsd.edu
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Cited by
Year
A large-scale binding and functional map of human RNA-binding proteins
EL Van Nostrand, P Freese, GA Pratt, X Wang, X Wei, R Xiao, SM Blue, ...
Nature 583 (7818), 711-719, 2020
10292020
Mapping the human genetic architecture of COVID-19
Writing group Writing group leaders Pathak Gita A. 6 Andrews Shea J. 7 Kanai ...
Nature 600 (7889), 472-477, 2021
8382021
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
3632022
Emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States
NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ...
Cell 184 (10), 2587-2594. e7, 2021
2942021
Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution
DA Lorenz, S Sathe, JM Einstein, GW Yeo
Rna 26 (1), 19-28, 2020
2302020
Context-dependent functional compensation between Ythdf m6A reader proteins
L Lasman, V Krupalnik, S Viukov, N Mor, A Aguilera-Castrejon, D Schneir, ...
Genes & development 34 (19-20), 1373-1391, 2020
2212020
Enhanced CLIP uncovers IMP protein-RNA targets in human pluripotent stem cells important for cell adhesion and survival
AE Conway, EL Van Nostrand, GA Pratt, S Aigner, ML Wilbert, ...
Cell reports 15 (3), 666-679, 2016
1552016
Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression
TLH Okholm, S Sathe, SS Park, AB Kamstrup, AM Rasmussen, A Shankar, ...
Genome medicine 12, 1-22, 2020
1452020
Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing
NM Martinez, A Su, MC Burns, JK Nussbacher, C Schaening, S Sathe, ...
Molecular cell 82 (3), 645-659. e9, 2022
1362022
Metagenomic insights into anaerobic metabolism along an Arctic peat soil profile
DA Lipson, JM Haggerty, A Srinivas, TK Raab, S Sathe, EA Dinsdale
PLoS One 8 (5), e64659, 2013
1142013
Genomic epidemiology identifies emergence and rapid transmission of SARS-CoV-2 B. 1.1. 7 in the United States
NL Washington, K Gangavarapu, M Zeller, A Bolze, ET Cirulli, ...
MedRxiv, 2021
1072021
Biallelic mutations in the 3′ exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing
RM Lardelli, AE Schaffer, VRC Eggens, MS Zaki, S Grainger, S Sathe, ...
Nature genetics 49 (3), 457-464, 2017
1002017
A small RNA-catalytic argonaute pathway tunes germline transcript levels to ensure embryonic divisions
A Gerson-Gurwitz, S Wang, S Sathe, R Green, GW Yeo, K Oegema, ...
Cell 165 (2), 396-409, 2016
962016
Large-scale tethered function assays identify factors that regulate mRNA stability and translation
EC Luo, JL Nathanson, FE Tan, JL Schwartz, JC Schmok, A Shankar, ...
Nature structural & molecular biology 27 (10), 989-1000, 2020
782020
Emergence of an early SARS-CoV-2 epidemic in the United States
M Zeller, K Gangavarapu, C Anderson, AR Smither, JA Vanchiere, ...
Cell 184 (19), 4939-4952. e15, 2021
532021
RNA-binding protein CPEB1 remodels host and viral RNA landscapes
R Batra, TJ Stark, AE Clark, JP Belzile, EC Wheeler, BA Yee, H Huang, ...
Nature structural & molecular biology 23 (12), 1101-1110, 2016
462016
Gain-of-function cardiomyopathic mutations in RBM20 rewire splicing regulation and re-distribute ribonucleoprotein granules within processing bodies
AM Fenix, Y Miyaoka, A Bertero, SM Blue, MJ Spindler, KKB Tan, ...
Nature Communications 12 (1), 6324, 2021
422021
Persistent mRNA localization defects and cell death in ALS neurons caused by transient cellular stress
S Markmiller, S Sathe, KL Server, TB Nguyen, A Fulzele, N Cody, ...
Cell Reports 36 (10), 2021
342021
Transcriptome-wide analysis of PGC-1α–binding RNAs identifies genes linked to glucagon metabolic action
CDJ Tavares, S Aigner, K Sharabi, S Sathe, B Mutlu, GW Yeo, ...
Proceedings of the National Academy of Sciences 117 (36), 22204-22213, 2020
282020
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
282020
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