| BRAT: a web-based tool for NLP-assisted text annotation P Stenetorp, S Pyysalo, G Topić, T Ohta, S Ananiadou, J Tsujii Proceedings of the Demonstrations at the 13th Conference of the European …, 2012 | 1680 | 2012 |
| GENIA corpus—a semantically annotated corpus for bio-textmining JD Kim, T Ohta, Y Tateisi, J Tsujii Bioinformatics 19 (suppl_1), i180-i182, 2003 | 1614 | 2003 |
| Introduction to the bio-entity recognition task at JNLPBA N Collier, T Ohta, Y Tsuruoka, Y Tateisi, JD Kim Proceedings of the International Joint Workshop on Natural Language …, 2004 | 849 | 2004 |
| Overview of BioNLP’09 shared task on event extraction JD Kim, T Ohta, S Pyysalo, Y Kano, J Tsujii Proceedings of the BioNLP 2009 workshop companion volume for shared task, 1-9, 2009 | 837 | 2009 |
| Developing a robust part-of-speech tagger for biomedical text Y Tsuruoka, Y Tateishi, JD Kim, T Ohta, J McNaught, S Ananiadou, ... Advances in Informatics: 10th Panhellenic Conference on Informatics, PCI …, 2005 | 623 | 2005 |
| Corpus annotation for mining biomedical events from literature JD Kim, T Ohta, J Tsujii BMC bioinformatics 9, 1-25, 2008 | 496 | 2008 |
| The GENIA corpus: An annotated research abstract corpus in molecular biology domain T Ohta, Y Tateisi, JD Kim, H Mima, J Tsujii Proceedings of the human language technology conference, 73-77, 2002 | 437 | 2002 |
| Overview of BioNLP shared task 2013 C Nédellec, R Bossy, JD Kim, JJ Kim, T Ohta, S Pyysalo, P Zweigenbaum Proceedings of the BioNLP shared task 2013 workshop, 1-7, 2013 | 299 | 2013 |
| Event extraction across multiple levels of biological organization S Pyysalo, T Ohta, M Miwa, HC Cho, J Tsujii, S Ananiadou Bioinformatics 28 (18), i575-i581, 2012 | 185 | 2012 |
| Overview of the cancer genetics and pathway curation tasks of bionlp shared task 2013 S Pyysalo, T Ohta, R Rak, A Rowley, HW Chun, SJ Jung, SP Choi, J Tsujii, ... BMC bioinformatics 16, 1-19, 2015 | 161 | 2015 |
| Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011 S Pyysalo, T Ohta, R Rak, D Sullivan, C Mao, C Wang, B Sobral, J Tsujii, ... BMC bioinformatics 13, 1-26, 2012 | 157 | 2012 |
| Syntax Annotation for the GENIA corpus Y Tateisi, A Yakushiji, T Ohta, J Tsujii Companion Volume to the Proceedings of Conference including Posters/Demos …, 2005 | 151 | 2005 |
| Semantic retrieval for the accurate identification of relational concepts in massive textbases Y Miyao, T Ohta, K Masuda, Y Tsuruoka, K Yoshida, T Ninomiya, J Tsujii Proceedings of the 21st International Conference on Computational …, 2006 | 127 | 2006 |
| The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers N Collier, HS Park, N Ogata, Y Tateisi, C Nobata, T Ohta, T Sekimizu, ... Ninth Conference of the European Chapter of the Association for …, 1999 | 116 | 1999 |
| BioCause: Annotating and analysing causality in the biomedical domain C Mihăilă, T Ohta, S Pyysalo, S Ananiadou BMC bioinformatics 14, 1-18, 2013 | 94 | 2013 |
| Open-domain anatomical entity mention detection T Ohta, S Pyysalo, J Tsujii, S Ananiadou Proceedings of the workshop on detecting structure in scholarly discourse, 27-36, 2012 | 94 | 2012 |
| AKANE system: protein-protein interaction pairs in BioCreAtIvE2 challenge, PPI-IPS subtask R Sætre, K Yoshida, A Yakushiji, Y Miyao, Y Matsubayashi, T Ohta Proceedings of the second biocreative challenge workshop 209, 212, 2007 | 94 | 2007 |
| Overview of the cancer genetics (cg) task of bionlp shared task 2013 S Pyysalo, T Ohta, S Ananiadou Proceedings of the BioNLP Shared Task 2013 Workshop, 58-66, 2013 | 92 | 2013 |
| New challenges for text mining: mapping between text and manually curated pathways K Oda, JD Kim, T Ohta, D Okanohara, T Matsuzaki, Y Tateisi, J Tsujii BMC bioinformatics 9, 1-14, 2008 | 81 | 2008 |
| Overview of the epigenetics and post-translational modifications (EPI) task of BioNLP shared task 2011 T Ohta, S Pyysalo, J Tsujii Proceedings of BioNLP Shared Task 2011 Workshop, 16-25, 2011 | 72 | 2011 |
Sampo PyysaloUniversity of TurkuVerified email at utu.fi