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Dmitry Molodenskiy
Dmitry Molodenskiy
Senior Scientific Software Engineer, European Molecular Biology Laboratory, Hamburg outstation
Verified email at embl-hamburg.de - Homepage
Title
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Cited by
Year
ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis
K Manalastas-Cantos, PV Konarev, NR Hajizadeh, AG Kikhney, ...
Journal of applied crystallography 54 (1), 343-355, 2021
7842021
SASBDB: Towards an automatically curated and validated repository for biological scattering data
AG Kikhney, CR Borges, DS Molodenskiy, CM Jeffries, DI Svergun
Protein science 29 (1), 66-75, 2020
2052020
Thermally induced conformational changes and protein–protein interactions of bovine serum albumin in aqueous solution under different pH and ionic strengths as revealed by SAXS …
D Molodenskiy, E Shirshin, T Tikhonova, A Gruzinov, G Peters, F Spinozzi
Physical Chemistry Chemical Physics 19 (26), 17143-17155, 2017
792017
Adding size exclusion chromatography (SEC) and light scattering (LS) devices to obtain high-quality small angle X-ray scattering (SAXS) data
MA Graewert, S Da Vela, TW Gräwert, DS Molodenskiy, CE Blanchet, ...
Crystals 10 (11), 975, 2020
562020
Autism-associated SHANK3 missense point mutations impact conformational fluctuations and protein turnover at synapses
M Bucher, S Niebling, Y Han, D Molodenskiy, F Hassani Nia, ...
Elife 10, e66165, 2021
282021
The role of SAXS and molecular simulations in 3D structure elucidation of a DNA aptamer against lung cancer
D Morozov, V Mironov, RV Moryachkov, IA Shchugoreva, PV Artyushenko, ...
Molecular Therapy-Nucleic Acids 25, 316-327, 2021
232021
An automated data processing and analysis pipeline for transmembrane proteins in detergent solutions
DS Molodenskiy, HDT Mertens, DI Svergun
Scientific reports 10 (1), 8081, 2020
182020
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
M Varadi, S Nair, I Sillitoe, G Tauriello, S Anyango, S Bienert, C Borges, ...
GigaScience 11, giac118, 2022
162022
MPBuilder: a PyMOL plugin for building and refinement of solubilized membrane proteins against small angle X-ray scattering data
DS Molodenskiy, DI Svergun, HDT Mertens
Journal of Molecular Biology 433 (11), 166888, 2021
162021
Artificial neural networks for solution scattering data analysis
DS Molodenskiy, DI Svergun, AG Kikhney
Structure 30 (6), 900-908. e2, 2022
132022
Highly Tunable Nanostructures in a Doubly pH‐Responsive Pentablock Terpolymer in Solution and in Thin Films
FA Jung, M Schart, L Bührend, E Meidinger, JJ Kang, BJ Niebuur, ...
Advanced Functional Materials 31 (32), 2102905, 2021
122021
β2-Type Amyloidlike Fibrils of Poly-l-glutamic Acid Convert into Long, Highly Ordered Helices upon Dissolution in Dimethyl Sulfoxide
S Berbeć, R Dec, D Molodenskiy, B Wielgus-Kutrowska, C Johannessen, ...
The Journal of Physical Chemistry B 122 (50), 11895-11905, 2018
112018
PP2A is activated by cytochrome c upon formation of a diffuse encounter complex with SET/TAF-Iβ
MÁ Casado-Combreras, F Rivero-Rodríguez, CA Elena-Real, ...
Computational and structural biotechnology journal 20, 3695-3707, 2022
72022
Rigid-to-flexible transition in a molecular brush in a good solvent at a semidilute concentration
JJ Kang, C Sachse, CH Ko, MA Schroer, SD Vela, D Molodenskiy, ...
Langmuir 38 (17), 5226-5236, 2022
62022
Interplay between various crystalline and hexatic-B phases in 75OBC liquid crystal: X-ray diffraction and calorimetry study
VP Voronov, AR Muratov, SN Sulyanov, DS Molodenskiy, ...
Liquid Crystals 47 (9), 1366-1378, 2020
62020
Thermal strains in focusing channels of the stations for X-ray diffraction analysis in the Sibir-2 storage ring
DM Kheĭker, EE Konoplev, DS Molodenskiĭ, VA Shishkov, ...
Crystallography Reports 55, 901-906, 2010
22010
Albumin conformational changes during glycation and thermal denaturation processes revealed by fluorescence spectroscopy and small-angle X-ray scattering
NR Rovnyagina, TN Tikhonova, DS Molodenskiy, EA Shirshin
Izvestiya of Saratov University. Physics 17 (3), 179-190, 2017
12017
Детектирование конформационных изменений альбумина при его гликировании и термической денатурации методами флуоресцентной спектроскопии и малоуглового рентгеновского рассеяния
НР Ровнягина, ТН Тихонова, ДС Молоденский, ЕА Ширшин
Известия Саратовского университета. Новая серия. Серия Физика 17 (3), 179-190, 2017
12017
Efficiency of the focusing channel of the Belok Station in the Sibir-2 storage ring
DS Molodenskiĭ, PV Dorovatovskiĭ, VV Zabrodskiĭ, DM Kheĭker
Crystallography Reports 55, 896-900, 2010
12010
AlphaPulldown2-A General Pipeline for High-Throughput Structural Modeling
D Molodenskiy, V Maurer, D Yu, G Chojnowski, S Bienert, G Tauriello, ...
bioRxiv, 2024.11. 28.625873, 2024
2024
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