| Unipept 4.0: functional analysis of metaproteome data R Gurdeep Singh, A Tanca, A Palomba, F Van der Jeugt, P Verschaffelt, ... Journal of proteome research 18 (2), 606-615, 2019 | 164* | 2019 |
| Unipept: tryptic peptide-based biodiversity analysis of metaproteome samples B Mesuere, B Devreese, G Debyser, M Aerts, P Vandamme, P Dawyndt Journal of proteome research 11 (12), 5773-5780, 2012 | 163 | 2012 |
| The Unipept Metaproteomics Analysis Pipeline B Mesuere, G Debyser, M Aerts, B Devreese, P Vandamme, P Dawyndt Proteomics 15 (8), 1437–1442, 2015 | 146 | 2015 |
| Faecal proteomics: a tool to investigate dysbiosis and inflammation in patients with cystic fibrosis G Debyser, B Mesuere, L Clement, J Van de Weygaert, P Van Hecke, ... Journal of Cystic Fibrosis 15 (2), 242-250, 2016 | 93 | 2016 |
| Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ... Nature communications 12 (1), 7305, 2021 | 90 | 2021 |
| The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ... Microbiome 9 (1), 243, 2021 | 75 | 2021 |
| Unipept web services for metaproteomics analysis B Mesuere, T Willems, F Van der Jeugt, B Devreese, P Vandamme, ... Bioinformatics 32 (11), 1746-1748, 2016 | 65 | 2016 |
| Peat substrate amended with chitin modulates the N-cycle, siderophore and chitinase responses in the lettuce rhizobiome C De Tender, B Mesuere, F Van der Jeugt, A Haegeman, T Ruttink, ... Scientific Reports 9 (1), 9890, 2019 | 63 | 2019 |
| High-throughput metaproteomics data analysis with Unipept: a tutorial B Mesuere, F Van der Jeugt, T Willems, T Naessens, B Devreese, ... Journal of proteomics 171, 11-22, 2018 | 61 | 2018 |
| Application of MALDI-TOF mass spectrometry for the detection of enterotoxins produced by pathogenic strains of the Bacillus cereus group V Tsilia, B Devreese, I de Baenst, B Mesuere, A Rajkovic, M Uyttendaele, ... Analytical and Bioanalytical Chemistry, 1-12, 2012 | 50 | 2012 |
| Disseminating metaproteomic informatics capabilities and knowledge using the Galaxy-P framework C Blank, C Easterly, B Gruening, J Johnson, CA Kolmeder, P Kumar, ... Proteomes 6 (1), 7, 2018 | 48 | 2018 |
| Survey of metaproteomics software tools for functional microbiome analysis R Sajulga, C Easterly, M Riffle, B Mesuere, T Muth, S Mehta, P Kumar, ... PLoS One 15 (11), e0241503, 2020 | 43 | 2020 |
| metaQuantome: an integrated, quantitative metaproteomics approach reveals connections between taxonomy and protein function in complex microbiomes CW Easterly, R Sajulga, S Mehta, J Johnson, P Kumar, S Hubler, ... Molecular & Cellular Proteomics 18 (8), S82-S91, 2019 | 40 | 2019 |
| The unique peptidome: Taxon-specific tryptic peptides as biomarkers for targeted metaproteomics B Mesuere, F Van der Jeugt, B Devreese, P Vandamme, P Dawyndt Proteomics 16 (17), 2303-2432, 2016 | 36 | 2016 |
| Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool P Verschaffelt, T Van Den Bossche, L Martens, P Dawyndt, B Mesuere Journal of Proteome Research 20 (4), 2005-2009, 2021 | 34 | 2021 |
| Dolos: Language‐agnostic plagiarism detection in source code R Maertens, C Van Petegem, N Strijbol, T Baeyens, AC Jacobs, ... Journal of Computer Assisted Learning 38 (4), 1046-1061, 2022 | 28 | 2022 |
| Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis T Van Den Bossche, P Verschaffelt, K Schallert, H Barsnes, P Dawyndt, ... Journal of proteome research 19 (8), 3562-3566, 2020 | 21 | 2020 |
| Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output Files K Schallert, P Verschaffelt, B Mesuere, D Benndorf, L Martens, ... Journal of Proteome Research 21 (4), 1175-1180, 2022 | 19* | 2022 |
| Pass/fail prediction in programming courses C Van Petegem, L Deconinck, D Mourisse, R Maertens, N Strijbol, ... Journal of Educational Computing Research 61 (1), 68-95, 2023 | 17 | 2023 |
| MegaGO: a fast yet powerful approach to assess functional gene ontology similarity across meta-omics data sets P Verschaffelt, T Van Den Bossche, W Gabriel, M Burdukiewicz, A Soggiu, ... Journal of Proteome Research 20 (4), 2083-2088, 2021 | 17 | 2021 |
Peter DawyndtProfessor in Computational Biology, Ghent University, BelgiumVerified email at UGent.be