Vasilis J. Promponas

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Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
STAVROS HAMODRAKASVerified email at biol.uoa.gr
Ioannis IliopoulosProfessor Medical School University of CreteVerified email at med.uoc.gr
Claude PasquierUniversité Côte d’Azur, CNRS, I3S, FranceVerified email at univ-cotedazur.fr
Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Pablo MierUniversidad Pablo de OlavideVerified email at upo.es
Silvio TosattoFull Professor of Bioinformatics, Department of Biomedical Sciences, University of PaduaVerified email at unipd.it
Aleksandra GrucaAssociate Professor, Silesian University of TechnologyVerified email at polsl.pl
Marcin GrynbergInstitute of Biochemistry and BiophysicsVerified email at ibb.waw.pl
Ioannis P. NezisProfessor of Cell Biology, University of WarwickVerified email at warwick.ac.uk
Daniel J. KlionskyUniversity of MichiganVerified email at umich.edu
Chris ChristodoulouProfessor, Department of Computer Science, University of CyprusVerified email at cs.ucy.ac.cy
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
Dosztanyi ZsuzsannaEötvös Loránd UniversityVerified email at ttk.elte.hu
Sophia TsokaKing's College LondonVerified email at kcl.ac.uk
Anton EnrightProfessor of RNA Biology and Genomics, Pathology Dept., University of CambridgeVerified email at cam.ac.uk
Theocharis (Theo) TheocharidesAssociate Professor, ECE , KIOS Research and Innovation Center of Excellence, University of CyprusVerified email at ucy.ac.cy
Agathoklis PapadopoulosVerified email at signumpath.com
Constantinos S. PattichisProf. of Computer Science, University of Cyprus & HealthXR Group, CYENS Centre of Excellence, CYPRUSVerified email at ucy.ac.cy
THEODOSIOS THEODOSIOUCo-founder ABCureD P.C., Founder TETRAKTYS IntelligenceVerified email at tetraktysintel.com

Vasilis J. Promponas

Assοciate Professor in Bioinformatics, University of Cyprus, Nicosia, Cyprus

Verified email at ucy.ac.cy

Bioinformatics Computational Biology


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Guidelines for the use and interpretation of assays for monitoring autophagy DJ Klionsky, K Abdelmohsen, A Abe, MJ Abedin, H Abeliovich, ... Autophagy 12 (1), 1-222, 2016	13774*	2016
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019	302	2019
Critical assessment of protein intrinsic disorder prediction M Necci, D Piovesan, SCE Tosatto Nature methods 18 (5), 472-481, 2021	274	2021
DisProt: intrinsic protein disorder annotation in 2020 A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ... Nucleic acids research 48 (D1), D269-D276, 2020	260	2020
iLIR: a web resource for prediction of Atg8-family interacting proteins I Kalvari, S Tsompanis, NC Mulakkal, R Osgood, T Johansen, IP Nezis, ... Autophagy 10 (5), 2014	234	2014
CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000	216	2000
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm C Pasquier, VJ Promponas, GA Palaios, JS Hamodrakas, SJ Hamodrakas Protein Engineering 12 (5), 381-385, 1999	214	1999
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes AC Jacomin, S Samavedam, V Promponas, IP Nezis Autophagy 12 (10), 1945-1953, 2016	181	2016
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation F Quaglia, B Mészáros, E Salladini, A Hatos, R Pancsa, LB Chemes, ... Nucleic acids research 50 (D1), D480-D487, 2022	155	2022
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003	124	2003
Guidelines for the use and interpretation of assays for monitoring autophagy 1 DJ Klionsky, AK Abdel-Aziz, S Abdelfatah, M Abdellatif, A Abdoli, S Abel, ... vol. 17 Issue: no. 1 Pages: 1-382, 2021	110	2021
Disentangling the complexity of low complexity proteins P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ... Briefings in Bioinformatics 21 (2), 458-472, 2020	93	2020
Territorial dynamics of Mexican Ant‐thrushes Formicarius moniliger revealed by individual recognition of their songs ANG Kirschel, ML Cody, ZT Harlow, VJ Promponas, EE Vallejo, CE Taylor Ibis 153 (2), 255-268, 2011	90	2011
Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions I Moreno-Indias, L Lahti, M Nedyalkova, I Elbere, G Roshchupkin, ... Frontiers in microbiology 12, 635781, 2021	76	2021
Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved C Ntountoumi, P Vlastaridis, D Mossialos, C Stathopoulos, I Iliopoulos, ... Nucleic acids research 47 (19), 9998-10009, 2019	63	2019
PRED-GPCR: GPCR recognition and family classification server PK Papasaikas, PG Bagos, ZI Litou, VJ Promponas, SJ Hamodrakas Nucleic acids research 32 (suppl_2), W380-W382, 2004	63	2004
PRED‐CLASS: Cascading neural networks for generalized protein classification and genome‐wide applications C Pasquier, VJ Promponas, SJ Hamodrakas Proteins: Structure, Function, and Bioinformatics 44 (3), 361-369, 2001	52	2001
DisProt in 2024: improving function annotation of intrinsically disordered proteins MC Aspromonte, MV Nugnes, F Quaglia, A Bouharoua, SCE Tosatto, ... Nucleic Acids Research 52 (D1), D434-D441, 2024	50	2024
Annotation inconsistencies beyond sequence similarity-based function prediction–phylogeny and genome structure VJ Promponas, I Iliopoulos, CA Ouzounis Standards in genomic sciences 10 (1), 108, 2015	50	2015
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins P Jarnot, J Ziemska-Legiecka, L Dobson, M Merski, P Mier, ... Nucleic acids research 48 (W1), W77-W84, 2020	47	2020

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