| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 1126 | 2013 |
| Approximate queries and representations for large data sequences H Shatkay, SB Zdonik Proceedings of the twelfth international conference on data engineering, 536-545, 1996 | 404 | 1996 |
| F-SNP: computationally predicted functional SNPs for disease association studies PH Lee, H Shatkay Nucleic acids research 36 (suppl_1), D820-D824, 2007 | 386 | 2007 |
| Mining the biomedical literature in the genomic era: an overview H Shatkay, R Feldman Journal of computational biology 10 (6), 821-855, 2003 | 354 | 2003 |
| Learning topological maps with weak local odometric information H Shatkay, LP Kaelbling IJCAI (2), 920-929, 1997 | 301 | 1997 |
| Whole-genome shotgun assembly and comparison of human genome assemblies S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ... Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004 | 277 | 2004 |
| Genes, themes and microarrays H Shatkay, S Edwards, WJ Wilbur, M Boguski Proc. Int. Conf. Intell. Syst. Mol. Biol 8, 317-327, 2000 | 250 | 2000 |
| Combining multi-species genomic data for microRNA identification using a Naive Bayes classifier M Yousef, M Nebozhyn, H Shatkay, S Kanterakis, LC Showe, MK Showe Bioinformatics 22 (11), 1325-1334, 2006 | 243 | 2006 |
| New directions in biomedical text annotation: definitions, guidelines and corpus construction WJ Wilbur, A Rzhetsky, H Shatkay BMC bioinformatics 7, 1-10, 2006 | 217 | 2006 |
| The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text M Krallinger, M Vazquez, F Leitner, D Salgado, A Chatr-Aryamontri, ... BMC bioinformatics 12, 1-31, 2011 | 196 | 2011 |
| SherLoc2: a high-accuracy hybrid method for predicting subcellular localization of proteins S Briesemeister, T Blum, S Brady, Y Lam, O Kohlbacher, H Shatkay Journal of proteome research 8 (11), 5363-5366, 2009 | 157 | 2009 |
| SherLoc: high-accuracy prediction of protein subcellular localization by integrating text and protein sequence data H Shatkay, A Höglund, S Brady, T Blum, P Dönnes, O Kohlbacher Bioinformatics 23 (11), 1410-1417, 2007 | 155 | 2007 |
| Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users H Shatkay, F Pan, A Rzhetsky, WJ Wilbur Bioinformatics 24 (18), 2086-2093, 2008 | 147 | 2008 |
| Integrating image data into biomedical text categorization H Shatkay, N Chen, D Blostein Bioinformatics 22 (14), e446-e453, 2006 | 132 | 2006 |
| Text mining for biology-the way forward: opinions from leading scientists RB Altman, CM Bergman, J Blake, C Blaschke, A Cohen, F Gannon, ... Genome biology 9, 1-15, 2008 | 131 | 2008 |
| An integrative scoring system for ranking SNPs by their potential deleterious effects PH Lee, H Shatkay Bioinformatics 25 (8), 1048-1055, 2009 | 115 | 2009 |
| Discovering semantic features in the literature: a foundation for building functional associations M Chagoyen, P Carmona-Saez, H Shatkay, JM Carazo, ... BMC bioinformatics 7, 1-19, 2006 | 114 | 2006 |
| Utilizing ECG-based heartbeat classification for hypertrophic cardiomyopathy identification QA Rahman, LG Tereshchenko, M Kongkatong, T Abraham, MR Abraham, ... IEEE transactions on nanobioscience 14 (5), 505-512, 2015 | 113 | 2015 |
| EpiLoc: a (working) text-based system for predicting protein subcellular location S Brady, H Shatkay Biocomputing 2008, 604-615, 2008 | 105 | 2008 |
| Rule-based extraction of experimental evidence in the biomedical domain: the KDD Cup 2002 (task 1) Y Regev, M Finkelstein-Landau, R Feldman, M Gorodetsky, X Zheng, ... ACM Sigkdd Explorations Newsletter 4 (2), 90-92, 2002 | 81 | 2002 |
