| Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions I Moreno-Indias, L Lahti, M Nedyalkova, I Elbere, G Roshchupkin, ... Frontiers in microbiology 12, 635781, 2021 | 76 | 2021 |
| Exploiting transfer learning for the reconstruction of the human gene regulatory network P Mignone, G Pio, D D’Elia, M Ceci Bioinformatics 36 (5), 1553-1561, 2020 | 65 | 2020 |
| A novel biclustering algorithm for the discovery of meaningful biological correlations between microRNAs and their target genes G Pio, M Ceci, D D'Elia, C Loglisci, D Malerba BMC bioinformatics 14, 1-25, 2013 | 62 | 2013 |
| Integrating microRNA target predictions for the discovery of gene regulatory networks: a semi-supervised ensemble learning approach G Pio, D Malerba, D D'Elia, M Ceci BMC bioinformatics 15, 1-17, 2014 | 60 | 2014 |
| Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae G Tripoli, D D'Elia, P Barsanti, C Caggese Genome biology 6, 1-17, 2005 | 57 | 2005 |
| ComiRNet: a web-based system for the analysis of miRNA-gene regulatory networks G Pio, M Ceci, D Malerba, D D'Elia BMC bioinformatics 16, 1-18, 2015 | 56 | 2015 |
| Ten simple rules on how to write a standard operating procedure S Hollmann, M Frohme, C Endrullat, A Kremer, D D’Elia, B Regierer, ... PLoS Computational Biology 16 (9), e1008095, 2020 | 46 | 2020 |
| NOTCH3 and CADASIL syndrome: a genetic and structural overview E Papakonstantinou, F Bacopoulou, D Brouzas, V Megalooikonomou, ... EMBnet. journal 24, 2019 | 39 | 2019 |
| MitoRes: a resource of nuclear-encoded mitochondrial genes and their products in Metazoa D Catalano, F Licciulli, A Turi, G Grillo, C Saccone, D D'Elia BMC bioinformatics 7, 1-7, 2006 | 36 | 2006 |
| Plant miRNAs reduce cancer cell proliferation by targeting MALAT1 and NEAT1: a beneficial cross-kingdom interaction F Marzano, MF Caratozzolo, A Consiglio, F Licciulli, S Liuni, E Sbisà, ... Frontiers in genetics 11, 552490, 2020 | 34 | 2020 |
| Prediction of new associations between ncRNAs and diseases exploiting multi-type hierarchical clustering EP Barracchia, G Pio, D D’Elia, M Ceci BMC bioinformatics 21 (1), 70, 2020 | 33 | 2020 |
| The MitoDrome database annotates and compares the OXPHOS nuclear genes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae. D D’Elia, D Catalano, F Licciulli, A Turi, G Tripoli, D Porcelli, C Saccone, ... Mitochondrion 6 (5), 252-257, 2006 | 27 | 2006 |
| Arena-Idb: a platform to build human non-coding RNA interaction networks V Bonnici, GD Caro, G Constantino, S Liuni, D D’Elia, N Bombieri, ... BMC bioinformatics 19, 25-38, 2018 | 22 | 2018 |
| Evolution of nuclearly encoded mitochondrial genes in Metazoa A De Grassi, C Caggese, D D'Elia, C Lanave, G Pesole, C Saccone Gene 354, 181-188, 2005 | 22 | 2005 |
| MitBASE: a comprehensive and integrated mitochondrial DNA database M Attimonelli, N Altamura, R Benne, C Boyen, A Brennicke, A Carone, ... Nucleic acids research 27 (1), 128-133, 1999 | 20 | 1999 |
| Hierarchical and Overlapping Co-Clustering of mRNA:miRNA Interactions MD Pio G, Ceci M, Loglisci C, D’Elia D ECAI 2012 242, 654-659, 2012 | 19 | 2012 |
| MitBASE : a comprehensive and integrated mitochondrial DNA database. The present status. M Attimonelli, N Altamura, R Benne, A Brennicke, JM Cooper, D D'Elia, ... Nucleic Acids Research 28, 148-52, 2000 | 19 | 2000 |
| Ten simple rules on how to develop a stakeholder engagement plan S Hollmann, B Regierer, J Bechis, L Tobin, D D’Elia PLoS Computational Biology 18 (10), e1010520, 2022 | 17 | 2022 |
| Isolation of a 25-kDa protein binding to a curved DNA upstream the origin of the L strand replication in the rat mitochondrial genome G Gadaleta, D D'Elia, L Capaccio, C Saccone, G Pepe Journal of Biological Chemistry 271 (23), 13537-13541, 1996 | 15 | 1996 |
| Overview of data preprocessing for machine learning applications in human microbiome research E Ibrahimi, MB Lopes, X Dhamo, A Simeon, R Shigdel, K Hron, B Stres, ... Frontiers in Microbiology 14, 1250909, 2023 | 14 | 2023 |
Michelangelo CeciUniversity of Bari "A. Moro"Verified email at di.uniba.it