| TISCH: a comprehensive web resource enabling interactive single-cell transcriptome visualization of tumor microenvironment D Sun, J Wang, Y Han, X Dong, J Ge, R Zheng, X Shi, B Wang, Z Li, ... Nucleic acids research 49 (D1), D1420-D1430, 2021 | 774 | 2021 |
| Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ... Nucleic acids research 47 (D1), D729-D735, 2019 | 700 | 2019 |
| Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse S Mei, Q Qin, Q Wu, H Sun, R Zheng, C Zang, M Zhu, J Wu, X Shi, L Taing, ... Nucleic acids research, gkw983, 2016 | 529 | 2016 |
| Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ... Genome biology 21, 1-14, 2020 | 222 | 2020 |
| Cistrome cancer: a web resource for integrative gene regulation modeling in cancer S Mei, CA Meyer, R Zheng, Q Qin, Q Wu, P Jiang, B Li, X Shi, B Wang, ... Cancer research 77 (21), e19-e22, 2017 | 129 | 2017 |
| Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks S Li, C Wan, R Zheng, J Fan, X Dong, CA Meyer, XS Liu Nucleic acids research 47 (W1), W206-W211, 2019 | 80 | 2019 |
| Determinants of transcription factor regulatory range CH Chen, R Zheng, C Tokheim, X Dong, J Fan, C Wan, Q Tang, M Brown, ... Nature communications 11 (1), 2472, 2020 | 59 | 2020 |
| MUC1-C drives stemness in progression of colitis to colorectal cancer W Li, N Zhang, C Jin, MD Long, H Rajabi, Y Yasumizu, A Fushimi, ... JCI insight 5 (12), e137112, 2020 | 51 | 2020 |
| Effect of acrylamide on oocyte nuclear maturation and cumulus cells apoptosis in mouse in vitro S Liu, L Jiang, T Zhong, S Kong, R Zheng, F Kong, C Zhang, L Zhang, ... PloS one 10 (8), e0135818, 2015 | 46 | 2015 |
| Epsin nanotherapy regulates cholesterol transport to fortify atheroma regression K Cui, X Gao, B Wang, H Wu, K Arulsamy, Y Dong, Y Xiao, X Jiang, ... Circulation research 132 (1), e22-e42, 2023 | 39 | 2023 |
| MEBOCOST: metabolic cell-cell communication modeling by single cell transcriptome R Zheng, Y Zhang, T Tsuji, L Zhang, YH Tseng, K Chen BioRxiv, 2022.05. 30.494067, 2022 | 32 | 2022 |
| ViMIC: a database of human disease-related virus mutations, integration sites and cis-effects Y Wang, Y Tong, Z Zhang, R Zheng, D Huang, J Yang, H Zong, F Tan, ... Nucleic Acids Research 50 (D1), D918-D927, 2022 | 22 | 2022 |
| Epigenetic landscape reveals MECOM as an endothelial lineage regulator J Lv, S Meng, Q Gu, R Zheng, X Gao, J Kim, M Chen, B Xia, Y Zuo, S Zhu, ... Nature communications 14 (1), 2390, 2023 | 20 | 2023 |
| Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data R Zheng, X Dong, C Wan, X Shi, X Zhang, CA Meyer Quantitative Biology 8, 267-276, 2020 | 13 | 2020 |
| Retinoblastoma protein as an intrinsic BRD4 inhibitor modulates small molecule BET inhibitor sensitivity in cancer D Ding, R Zheng, Y Tian, R Jimenez, X Hou, SJ Weroha, L Wang, L Shi, ... Nature communications 13 (1), 6311, 2022 | 11 | 2022 |
| IGSF8 is an innate immune checkpoint and cancer immunotherapy target Y Li, X Wu, C Sheng, H Liu, H Liu, Y Tang, C Liu, Q Ding, B Xie, X Xiao, ... Cell 187 (11), 2703-2716. e23, 2024 | 10 | 2024 |
| Comprehensive analysis of intercellular communication in the thermogenic adipose niche F Shamsi, R Zheng, LL Ho, K Chen, YH Tseng Communications Biology 6 (1), 761, 2023 | 7 | 2023 |
| Aroclor 1254 impairs the development of ovarian follicles by inducing the apoptosis of granulosa cells S Liu, C Yu, D Cheng, X Han, L Jiang, R Zheng, X Meng, T Zhang, L Huo Toxicology Research 4 (2), 302-310, 2015 | 7 | 2015 |
| Cancer cell resistance to IFNγ can occur via enhanced double-strand break repair pathway activity T Han, X Wang, S Shi, W Zhang, J Wang, Q Wu, Z Li, J Fu, R Zheng, ... Cancer Immunology Research 11 (3), 381-398, 2023 | 6 | 2023 |
| A knowledge empowered explainable gene ontology fingerprint approach to improve gene functional explication and prediction Y Wang, H Zong, F Yang, Y Tong, Y Xie, Z Zhang, H Huang, R Zheng, ... Iscience 26 (4), 2023 | 4 | 2023 |
Cliff MeyerDana-Farber Cancer Institute and Harvard T.H. Chan School of Public HealthVerified email at jimmy.harvard.edu
