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Kiyoshi Asai
Kiyoshi Asai
Professor of Computational Biology, University of Tokyo
Verified email at k.u-tokyo.ac.jp
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Cited by
Year
Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
WC Nierman, A Pain, MJ Anderson, JR Wortman, HS Kim, J Arroyo, ...
Nature 438 (7071), 1151-1156, 2005
16942005
Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae
JE Galagan, SE Calvo, C Cuomo, LJ Ma, JR Wortman, S Batzoglou, ...
Nature 438 (7071), 1105-1115, 2005
16502005
Genome sequencing and analysis of Aspergillus oryzae
M Machida, K Asai, M Sano, T Tanaka, T Kumagai, G Terai, KI Kusumoto, ...
Nature 438 (7071), 1157-1161, 2005
15242005
Drosophila endogenous small RNAs bind to Argonaute 2 in somatic cells
Y Kawamura, K Saito, T Kin, Y Ono, K Asai, T Sunohara, TN Okada, ...
Nature 453 (7196), 793-797, 2008
5642008
A regulatory circuit for piwi by the large Maf gene traffic jam in Drosophila
K Saito, S Inagaki, T Mituyama, Y Kawamura, Y Ono, E Sakota, H Kotani, ...
Nature 461 (7268), 1296-1299, 2009
4982009
PBSIM: PacBio reads simulator—toward accurate genome assembly
Y Ono, K Asai, M Hamada
Bioinformatics 29 (1), 119-121, 2013
3752013
CentroidFold: a web server for RNA secondary structure prediction
K Sato, M Hamada, K Asai, T Mituyama
Nucleic acids research 37 (suppl_2), W277-W280, 2009
3502009
The voltage-sensitive sodium channel is a bell-shaped molecule with several cavities
C Sato, Y Ueno, K Asai, K Takahashi, M Sato, A Engel, Y Fujiyoshi
Nature 409 (6823), 1047-1051, 2001
3472001
Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing
A Azuma-Mukai, H Oguri, T Mituyama, ZR Qian, K Asai, H Siomi, ...
Proceedings of the National Academy of Sciences 105 (23), 7964-7969, 2008
3452008
IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming
K Sato, Y Kato, M Hamada, T Akutsu, K Asai
Bioinformatics 27 (13), i85-i93, 2011
3212011
Marginalized kernels for biological sequences
K Tsuda, T Kin, K Asai
BIOINFORMATICS-OXFORD- 18, S268-S275, 2002
2832002
Prediction of RNA secondary structure using generalized centroid estimators
M Hamada, H Kiryu, K Sato, T Mituyama, K Asai
Bioinformatics 25 (4), 465-473, 2009
2702009
Genomics of Aspergillus oryzae
T Kobayashi, K Abe, K Asai, K Gomi, PR Juvvadi, M Kato, K Kitamoto, ...
Bioscience, biotechnology, and biochemistry 71 (3), 646-670, 2007
2372007
Prediction of protein secondary structure by the hidden Markov model
K Asai, S Hayamizu, K Handa
Bioinformatics 9 (2), 141-146, 1993
2311993
fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences
T Kin, K Yamada, G Terai, H Okida, Y Yoshinari, Y Ono, A Kojima, ...
Nucleic acids research 35 (suppl_1), D145-D148, 2007
1812007
The Functional RNA Database 3.0: databases to support mining and annotation of functional RNAs
T Mituyama, K Yamada, E Hattori, H Okida, Y Ono, G Terai, A Yoshizawa, ...
Nucleic acids research 37 (suppl_1), D89-D92, 2009
1492009
Lnc RNA‐dependent nuclear stress bodies promote intron retention through SR protein phosphorylation
K Ninomiya, S Adachi, T Natsume, J Iwakiri, G Terai, K Asai, T Hirose
The EMBO journal 39 (3), e102729, 2020
1372020
A fast structural multiple alignment method for long RNA sequences
Y Tabei, H Kiryu, T Kin, K Asai
BMC bioinformatics 9, 1-17, 2008
1352008
PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores
Y Ono, K Asai, M Hamada
Bioinformatics 37 (5), 589-595, 2021
1322021
Multi-task learning via conic programming
T Kato, H Kashima, M Sugiyama, K Asai
Advances in Neural Information Processing Systems 20, 2007
1252007
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