| Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences TS Mikkelsen, MJ Wakefield, B Aken, CT Amemiya, JL Chang, S Duke, ... Nature 447 (7141), 167-177, 2007 | 812 | 2007 |
| STAMP: a web tool for exploring DNA-binding motif similarities S Mahony, PV Benos Nucleic Acids Research 35 (suppl 2), W253-W258, 2007 | 579 | 2007 |
| The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation M Iwafuchi-Doi, G Donahue, A Kakumanu, JA Watts, S Mahony, BF Pugh, ... Molecular cell 62 (1), 79-91, 2016 | 446 | 2016 |
| High resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraints Y Guo, S Mahony, DK Gifford PLOS Computational Biology 8 (8), e1002638, 2012 | 346 | 2012 |
| ORegAnno: an open-access community-driven resource for regulatory annotation OL Griffith, SB Montgomery, B Bernier, B Chu, K Kasaian, S Aerts, ... Nucleic acids research 36 (suppl_1), D107-D113, 2007 | 321 | 2007 |
| Synergistic binding of transcription factors to cell-specific enhancers programs motor neuron identity EO Mazzoni, S Mahony, M Closser, CA Morrison, S Nedelec, DJ Williams, ... Nature neuroscience 16 (9), 1219-1227, 2013 | 256 | 2013 |
| A high-resolution protein architecture of the budding yeast genome MJ Rossi, PK Kuntala, WKM Lai, N Yamada, N Badjatia, C Mittal, G Kuzu, ... Nature 592 (7853), 309-314, 2021 | 179 | 2021 |
| Reprogrammed stomach tissue as a renewable source of functional β cells for blood glucose regulation C Ariyachet, A Tovaglieri, G Xiang, J Lu, MS Shah, CA Richmond, ... Cell Stem Cell 18 (3), 410-421, 2016 | 179 | 2016 |
| Saltatory remodeling of Hox chromatin in response to rostrocaudal patterning signals EO Mazzoni, S Mahony, M Peljto, T Patel, SR Thornton, S McCuine, ... Nature neuroscience 16 (9), 1191-1198, 2013 | 172 | 2013 |
| Reconstructing an ancestral mammalian immune supercomplex from a marsupial major histocompatibility complex K Belov, JE Deakin, AT Papenfuss, ML Baker, SD Melman, HV Siddle, ... PLoS biology 4 (3), e46, 2006 | 167 | 2006 |
| Global Control of Motor Neuron Topography Mediated by the Repressive Actions of a Single Hox Gene H Jung, J Lacombe, EO Mazzoni, KF Liem Jr, J Grinstein, S Mahony, ... Neuron 67 (5), 781-796, 2010 | 153 | 2010 |
| DNA familial binding profiles made easy: comparison of various motif alignment and clustering strategies S Mahony, PE Auron, PV Benos PLoS computational biology 3 (3), e61, 2007 | 152 | 2007 |
| Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons S Lodato, BJ Molyneaux, E Zuccaro, LA Goff, HH Chen, W Yuan, ... Nature neuroscience 17 (8), 1046-1054, 2014 | 149 | 2014 |
| Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis S Mahony, EO Mazzoni, S McCuine, RA Young, H Wichterle, DK Gifford Genome biology 12, 1-15, 2011 | 145 | 2011 |
| Proneural factors Ascl1 and Neurog2 contribute to neuronal subtype identities by establishing distinct chromatin landscapes B Aydin, A Kakumanu, M Rossillo, M Moreno-Estellés, G Garipler, ... Nature neuroscience 22 (6), 897-908, 2019 | 143 | 2019 |
| A multi-step transcriptional and chromatin state cascade underlies motor neuron programming from embryonic stem cells S Velasco, MM Ibrahim, A Kakumanu, G Garipler, B Aydin, MA Al-Sayegh, ... Cell Stem Cell 20 (2), 205–217, 2017 | 110 | 2017 |
| miniMDS: 3D structural inference from high-resolution Hi-C data L Rieber, S Mahony Bioinformatics 33 (14), i261-i266, 2017 | 97 | 2017 |
| Transcription factor binding site identification using the self-organizing map S Mahony, D Hendrix, A Golden, TJ Smith, DS Rokhsar Bioinformatics 21 (9), 1807-1814, 2005 | 91 | 2005 |
| Embryonic stem cell–based mapping of developmental transcriptional programs EO Mazzoni, S Mahony, M Iacovino, CA Morrison, G Mountoufaris, ... Nature methods 8 (12), 1056-1058, 2011 | 88 | 2011 |
| An integrated model of multiple-condition ChIP-Seq data reveals predeterminants of Cdx2 binding S Mahony, MD Edwards, EO Mazzoni, RI Sherwood, A Kakumanu, ... PLoS computational biology 10 (3), e1003501, 2014 | 87 | 2014 |
Esteban O MazzoniNew York UniversityVerified email at nyu.edu