| Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ... Nucleic acids research 45 (D1), D535-D542, 2017 | 1640 | 2017 |
| KBase: the United States department of energy systems biology knowledgebase AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ... Nature biotechnology 36 (7), 566-569, 2018 | 1289 | 2018 |
| The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020 | 944 | 2020 |
| Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Nucleic acids research 51 (D1), D678-D689, 2023 | 581 | 2023 |
| PATRIC as a unique resource for studying antimicrobial resistance DA Antonopoulos, R Assaf, RK Aziz, T Brettin, C Bun, N Conrad, JJ Davis, ... Briefings in bioinformatics 20 (4), 1094-1102, 2019 | 116 | 2019 |
| The DOE systems biology knowledgebase (KBase) AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... BioRxiv, 096354, 2016 | 79 | 2016 |
| Modeling central metabolism and energy biosynthesis across microbial life JN Edirisinghe, P Weisenhorn, N Conrad, F Xia, R Overbeek, RL Stevens, ... Bmc Genomics 17, 1-11, 2016 | 49 | 2016 |
| PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency SMD Seaver, C Lerma‐Ortiz, N Conrad, A Mikaili, A Sreedasyam, ... The Plant Journal 95 (6), 1102-1113, 2018 | 36 | 2018 |
| Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data JP Faria, R Overbeek, RC Taylor, N Conrad, V Vonstein, A Goelzer, ... Frontiers in Microbiology 7, 275, 2016 | 27 | 2016 |
| Systematic identification and analysis of frequent gene fusion events in metabolic pathways CS Henry, C Lerma-Ortiz, SY Gerdes, JD Mullen, R Colasanti, A Zhukov, ... BMC genomics 17, 1-17, 2016 | 23 | 2016 |
| Genomic analysis of metastatic solid tumors in veterans: findings from the VHA National Precision Oncology Program PJ Poonnen, JE Duffy, B Hintze, M Shukla, TS Brettin, NR Conrad, H Yoo, ... JCO Precision Oncology 3, 1-13, 2019 | 22 | 2019 |
| Constructing and analyzing metabolic flux models of microbial communities JP Faria, T Khazaei, JN Edirisinghe, P Weisenhorn, SMD Seaver, ... Hydrocarbon and Lipid Microbiology Protocols: Genetic, Genomic and System …, 2017 | 15 | 2017 |
| The DOE systems biology knowledgebase (KBase). bioRxiv 096354 AP Arkin, RL Stevens, RW Cottingham, S Maslov, CS Henry, P Dehal, ... | 10 | 2016 |
| ModelSEED v2: High-throughput genome-scale metabolic model reconstruction with enhanced energy biosynthesis pathway prediction JP Faria, F Liu, JN Edirisinghe, N Gupta, SMD Seaver, AP Freiburger, ... bioRxiv, 2023.10. 04.556561, 2023 | 8 | 2023 |
| Optimizing cloud motion estimation on the edge with phase correlation and optical flow BA Raut, P Muradyan, R Sankaran, RC Jackson, S Park, SA Shahkarami, ... Atmospheric Measurement Techniques 16 (5), 1195-1209, 2023 | 7* | 2023 |
| KBase: an integrated knowledgebase for predictive biology and environmental research A Palumbo, J Baumohl, A Best, J Bischof, B Bowen, T Brettin, T Brown, ... Proceedings of the International Conference on Bioinformatics …, 2014 | 3 | 2014 |
| CROCUS Air Quality Data at University of Illinois-Chicago Tower J O'Brien, M Tuftedal, E Wawrzyniak, M Berkelhammer, M Grover, S Collis, ... Environmental System Science Data Infrastructure for a Virtual Ecosystem …, 2024 | | 2024 |
| CROCUS Air Quality Data at Argonne National Laboratory Prairie Site M Tuftedal, J O'Brien, P Muradyan, S Collis, R Sankaran, P Beckman, ... Environmental System Science Data Infrastructure for a Virtual Ecosystem …, 2024 | | 2024 |
| CROCUS Weather Data at Chicago State University Prairie Site J O'Brien, M Tuftedal, T Gala, E Wawrzyniak, M Grover, S Collis, ... Environmental System Science Data Infrastructure for a Virtual Ecosystem …, 2024 | | 2024 |
| Comparative Genomic Analysis of Bacterial Data in BV-BRC: An Example Exploring Antimicrobial Resistance AR Wattam, N Bowers, T Brettin, N Conrad, C Cucinell, JJ Davis, ... Comparative Genomics: Methods and Protocols, 547-571, 2024 | | 2024 |
Christopher HenryComputational Biologist, Argonne National LaboratoryVerified email at mcs.anl.gov