| High-resolution mapping of protein sequence-function relationships DM Fowler, CL Araya, SJ Fleishman, EH Kellogg, JJ Stephany, D Baker, ... Nature methods 7 (9), 741-746, 2010 | 627 | 2010 |
| Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens DW Morgens, M Wainberg, EA Boyle, O Ursu, CL Araya, CK Tsui, ... Nature communications 8 (1), 15178, 2017 | 386 | 2017 |
| A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function CL Araya, DM Fowler, W Chen, I Muniez, JW Kelly, S Fields Proceedings of the National Academy of Sciences 109 (42), 16858-16863, 2012 | 290 | 2012 |
| Quantitative analysis of RNA-protein interactions on a massively parallel array reveals biophysical and evolutionary landscapes JD Buenrostro, CL Araya, LM Chircus, CJ Layton, HY Chang, MP Snyder, ... Nature biotechnology 32 (6), 562-568, 2014 | 262 | 2014 |
| Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans C Cenik, ES Cenik, GW Byeon, F Grubert, SI Candille, D Spacek, ... Genome research 25 (11), 1610-1621, 2015 | 248 | 2015 |
| Deep mutational scanning: assessing protein function on a massive scale CL Araya, DM Fowler Trends in biotechnology 29 (9), 435-442, 2011 | 245 | 2011 |
| Comparative analysis of regulatory information and circuits across distant species AP Boyle, CL Araya, C Brdlik, P Cayting, C Cheng, Y Cheng, K Gardner, ... Nature 512 (7515), 453-456, 2014 | 231 | 2014 |
| Sushi. R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures DH Phanstiel, AP Boyle, CL Araya, MP Snyder Bioinformatics 30 (19), 2808-2810, 2014 | 200 | 2014 |
| Enrich: software for analysis of protein function by enrichment and depletion of variants DM Fowler, CL Araya, W Gerard, S Fields Bioinformatics 27 (24), 3430-3431, 2011 | 147 | 2011 |
| Regulatory analysis of the C. elegans genome with spatiotemporal resolution CL Araya, T Kawli, A Kundaje, L Jiang, B Wu, D Vafeados, R Terrell, ... Nature 512 (7515), 400-405, 2014 | 129 | 2014 |
| AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis TJ Boyle, Z Bao, JI Murray, CL Araya, RH Waterston BMC bioinformatics 7, 1-14, 2006 | 125 | 2006 |
| Whole-genome sequencing of a laboratory-evolved yeast strain CL Araya, C Payen, MJ Dunham, S Fields BMC genomics 11, 1-10, 2010 | 124 | 2010 |
| Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations CL Araya, C Cenik, JA Reuter, G Kiss, VS Pande, MP Snyder, ... Nature genetics 48 (2), 117-125, 2016 | 99 | 2016 |
| Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae A McKinlay, CL Araya, S Fields G3: Genes| Genomes| Genetics 1 (7), 549-558, 2011 | 26 | 2011 |
| Prioritizing genes for systematic variant effect mapping D Kuang, R Truty, J Weile, B Johnson, K Nykamp, C Araya, RL Nussbaum, ... Bioinformatics 36 (22-23), 5448-5455, 2020 | 12 | 2020 |
| Systems and Methods for the Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework CL Araya, JA Reuter, SR Padigepati, A Colavin US Patent App. 16/011,753, 2018 | 11 | 2018 |
| Interpretation of Genetic and Genomic Variants via an Integrated Computational and Experimental Deep Mutational Learning Framework CL Araya, JA Reuter, SR Padigepati, A Colavin US Patent App. 16/624,225, 2021 | 7 | 2021 |
| Molecular evidence platform for auditable, continuous optimization of variant interpretation in genetic and genomic testing and analysis A Colavin, CL Araya, JA Reuter US Patent 11,462,299, 2022 | 6 | 2022 |
| Systems and Methods for Multi-Scale, Annotation-Independent Detection of Functionally-Diverse Units of Recurrent Genomic Alteration CL Araya, C Cenik, WJ Greenleaf, JA Reuter, MP Snyder US Patent App. 15/080,491, 2016 | 3 | 2016 |
| Correction: Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution CL Araya, T Kawli, A Kundaje, L Jiang, B Wu, D Vafeados, R Terrell, ... Nature 528 (7580), 152-152, 2015 | 3 | 2015 |
Michael SnyderStanford UniversityVerified email at stanford.edu