| Mfuzz: a software package for soft clustering of microarray data L Kumar, ME Futschik Bioinformation 2 (1), 5, 2007 | 1326 | 2007 |
| Tight regulation of unstructured proteins: from transcript synthesis to protein degradation J Gsponer, ME Futschik, SA Teichmann, MM Babu Science 322 (5906), 1365-1368, 2008 | 532 | 2008 |
| Noise-robust soft clustering of gene expression time-course data ME Futschik, B Carlisle Journal of bioinformatics and computational biology 3 (04), 965-988, 2005 | 502 | 2005 |
| Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution D Lindell, JD Jaffe, ML Coleman, ME Futschik, IM Axmann, T Rector, ... Nature 449 (7158), 83-86, 2007 | 379 | 2007 |
| Choreography of the transcriptome, photophysiology, and cell cycle of a minimal photoautotroph, Prochlorococcus ER Zinser, D Lindell, ZI Johnson, ME Futschik, C Steglich, ML Coleman, ... PloS one 4 (4), e5135, 2009 | 234 | 2009 |
| UniHI: an entry gate to the human protein interactome G Chaurasia, Y Iqbal, C Hänig, H Herzel, EE Wanker, ME Futschik Nucleic acids research 35 (suppl_1), D590-D594, 2007 | 160 | 2007 |
| The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus C Steglich, ME Futschik, D Lindell, B Voss, SW Chisholm, WR Hess PLoS Genetics 4 (8), e1000173, 2008 | 155 | 2008 |
| Association of CDH1 haplotypes with susceptibility to sporadic diffuse gastric cancer B Humar, F Graziano, S Cascinu, V Catalano, AM Ruzzo, M Magnani, ... Oncogene 21 (53), 8192-8195, 2002 | 131 | 2002 |
| Comparison of human protein–protein interaction maps ME Futschik, G Chaurasia, H Herzel Bioinformatics 23 (5), 605-611, 2007 | 125 | 2007 |
| Transcriptome dynamics of a broad host-range cyanophage and its hosts S Doron, A Fedida, MA Hernández-Prieto, G Sabehi, I Karunker, D Stazic, ... The ISME journal 10 (6), 1437-1455, 2016 | 114 | 2016 |
| Short RNA half-lives in the slow-growing marine cyanobacterium Prochlorococcus C Steglich, D Lindell, M Futschik, T Rector, R Steen, SW Chisholm Genome biology 11, 1-14, 2010 | 109 | 2010 |
| StemChecker: a web-based tool to discover and explore stemness signatures in gene sets JP Pinto, RK Kalathur, DV Oliveira, T Barata, RSR Machado, S Machado, ... Nucleic acids research 43 (W1), W72-W77, 2015 | 105 | 2015 |
| UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks RKR Kalathur, JP Pinto, MA Hernandez-Prieto, RSR Machado, D Almeida, ... Nucleic acids research 42 (D1), D408-D414, 2014 | 99 | 2014 |
| Medical decision support systems utilizing gene expression and clinical information and method for use NK Kasabov, ME Futschik, MJ Sullivan, AE Reeve | 91 | 2004 |
| Iron Deprivation in Synechocystis: Inference of Pathways, Non-coding RNAs, and Regulatory Elements from Comprehensive Expression Profiling MA Hernández-Prieto, V Schön, J Georg, L Barreira, J Varela, WR Hess, ... G3: Genes| Genomes| Genetics 2 (12), 1475-1495, 2012 | 90 | 2012 |
| Identification of the direct regulon of NtcA during early acclimation to nitrogen starvation in the cyanobacterium Synechocystis sp. PCC 6803 J Giner-Lamia, R Robles-Rengel, MA Hernández-Prieto, MI Muro-Pastor, ... Nucleic acids research 45 (20), 11800-11820, 2017 | 88 | 2017 |
| Evolving connectionist systems for knowledge discovery from gene expression data of cancer tissue ME Futschik, A Reeve, N Kasabov Artificial Intelligence in Medicine 28 (2), 165-189, 2003 | 86 | 2003 |
| Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1 J Georg, G Kostova, L Vuorijoki, V Schön, T Kadowaki, T Huokko, ... Current Biology 27 (10), 1425-1436. e7, 2017 | 80 | 2017 |
| UniHI 4: new tools for query, analysis and visualization of the human protein–protein interactome G Chaurasia, S Malhotra, J Russ, S Schnoegl, C Hänig, EE Wanker, ... Nucleic acids research 37 (suppl_1), D657-D660, 2009 | 76 | 2009 |
| Dynamic circadian protein–protein interaction networks predict temporal organization of cellular functions T Wallach, K Schellenberg, B Maier, RKR Kalathur, P Porras, EE Wanker, ... PLoS genetics 9 (3), e1003398, 2013 | 66 | 2013 |
