| Four-gene pan-African blood signature predicts progression to tuberculosis S Suliman, EG Thompson, J Sutherland, J Weiner 3rd, MOC Ota, ... American journal of respiratory and critical care medicine 197 (9), 1198-1208, 2018 | 282 | 2018 |
| Metabolite changes in blood predict the onset of tuberculosis J Weiner 3rd, J Maertzdorf, JS Sutherland, FJ Duffy, E Thompson, ... Nature communications 9 (1), 5208, 2018 | 148 | 2018 |
| Linking EPCR-binding PfEMP1 to brain swelling in pediatric cerebral malaria A Kessler, S Dankwa, M Bernabeu, V Harawa, SA Danziger, F Duffy, ... Cell host & microbe 22 (5), 601-614. e5, 2017 | 122 | 2017 |
| Ultra-low dose aerosol infection of mice with Mycobacterium tuberculosis more closely models human tuberculosis CR Plumlee, FJ Duffy, BH Gern, JL Delahaye, SB Cohen, CR Stoltzfus, ... Cell host & microbe 29 (1), 68-82. e5, 2021 | 94 | 2021 |
| Plasma N-glycans in colorectal cancer risk M Doherty, E Theodoratou, I Walsh, B Adamczyk, H Stöckmann, F Agakov, ... Scientific reports 8 (1), 8655, 2018 | 88 | 2018 |
| Detection of tuberculosis recurrence, diagnosis and treatment response by a blood transcriptomic risk signature in HIV-infected persons on antiretroviral therapy F Darboe, SK Mbandi, K Naidoo, N Yende-Zuma, L Lewis, EG Thompson, ... Frontiers in microbiology 10, 1441, 2019 | 68 | 2019 |
| Contained Mycobacterium tuberculosis infection induces concomitant and heterologous protection J Nemeth, GS Olson, AC Rothchild, AN Jahn, D Mai, FJ Duffy, ... PLoS pathogens 16 (7), e1008655, 2020 | 54 | 2020 |
| Computational approaches to developing short cyclic peptide modulators of protein–protein interactions FJ Duffy, M Devocelle, DC Shields Computational peptidology, 241-271, 2015 | 54 | 2015 |
| CycloPs: generating virtual libraries of cyclized and constrained peptides including nonnatural amino acids FJ Duffy, M Verniere, M Devocelle, E Bernard, DC Shields, AJ Chubb Journal of chemical information and modeling 51 (4), 829-836, 2011 | 54 | 2011 |
| Immunometabolic signatures predict risk of progression to active tuberculosis and disease outcome FJ Duffy, J Weiner III, S Hansen, DL Tabb, S Suliman, E Thompson, ... Frontiers in immunology 10, 527, 2019 | 51 | 2019 |
| A serum circulating miRNA signature for short-term risk of progression to active tuberculosis among household contacts FJ Duffy, E Thompson, K Downing, S Suliman, H Mayanja-Kizza, ... Frontiers in immunology 9, 661, 2018 | 47 | 2018 |
| Predicting binding within disordered protein regions to structurally characterised peptide-binding domains W Khan, F Duffy, G Pollastri, DC Shields, C Mooney PLoS One 8 (9), e72838, 2013 | 44 | 2013 |
| Meta-analysis of Plasmodium falciparum var Signatures Contributing to Severe Malaria in African Children and Indian Adults F Duffy, M Bernabeu, PH Babar, A Kessler, CW Wang, M Vaz, L Chery, ... MBio 10 (2), 10.1128/mbio. 00217-19, 2019 | 37 | 2019 |
| Determinants of brain swelling in pediatric and adult cerebral malaria PK Sahu, FJ Duffy, S Dankwa, M Vishnyakova, M Majhi, L Pirpamer, ... JCI insight 6 (18), e145823, 2021 | 30 | 2021 |
| Multinomial modelling of TB/HIV co-infection yields a robust predictive signature and generates hypotheses about the HIV+ TB+ disease state FJ Duffy, EG Thompson, TJ Scriba, DE Zak PLoS One 14 (7), e0219322, 2019 | 25 | 2019 |
| Angiotensin II receptor I auto-antibodies following SARS-CoV-2 infection Y Jiang, F Duffy, J Hadlock, A Raappana, S Styrchak, I Beck, FD Mast, ... PLoS One 16 (11), e0259902, 2021 | 17 | 2021 |
| Virtual screening using combinatorial cyclic peptide libraries reveals protein interfaces readily targetable by cyclic peptides FJ Duffy, D O’Donovan, M Devocelle, N Moran, DJ O’Connell, DC Shields Journal of Chemical Information and Modeling 55 (3), 600-613, 2015 | 15 | 2015 |
| The peripheral blood transcriptome is correlated with PET measures of lung inflammation during successful tuberculosis treatment T Odia, ST Malherbe, S Meier, E Maasdorp, L Kleynhans, N Du Plessis, ... Frontiers in immunology 11, 596173, 2021 | 12 | 2021 |
| GlycoProfileAssigner: automated structural assignment with error estimation for glycan LC data FJ Duffy, PM Rudd Bioinformatics 31 (13), 2220-2221, 2015 | 12 | 2015 |
| Computational opportunities and challenges in finding cyclic peptide modulators of protein–protein interactions F Duffy, N Maheshwari, NV Buchete, D Shields Cyclic Peptide Design, 73-95, 2019 | 11 | 2019 |
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