| Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ... Molecular systems biology 18 (3), e10798, 2022 | 443 | 2022 |
| AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics WF Zeng, XX Zhou, S Willems, C Ammar, M Wahle, I Bludau, E Voytik, ... Nature Communications 13 (1), 7238, 2022 | 113 | 2022 |
| Death rate of E. coli during starvation is set by maintenance cost and biomass recycling SJ Schink, E Biselli, C Ammar, U Gerland Cell systems 9 (1), 64-73. e3, 2019 | 105 | 2019 |
| Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome FA Rosenberger, M Thielert, MT Strauss, L Schweizer, C Ammar, ... Nature Methods 20 (10), 1530-1536, 2023 | 76 | 2023 |
| Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel M Thielert, ECM Itang, C Ammar, FA Rosenberger, I Bludau, L Schweizer, ... Molecular Systems Biology 19 (9), e11503, 2023 | 56 | 2023 |
| Comparing the biological washout of β+-activity induced in mice brain after 12C-ion and proton irradiation C Ammar, K Frey, J Bauer, C Melzig, S Chiblak, M Hildebrandt, D Unholtz, ... Physics in Medicine & Biology 59 (23), 7229, 2014 | 50 | 2014 |
| AlphaPept: a modern and open framework for MS-based proteomics MT Strauss, I Bludau, WF Zeng, E Voytik, C Ammar, JP Schessner, ... Nature Communications 15 (1), 2168, 2024 | 45 | 2024 |
| Ms-empire utilizes peptide-level noise distributions for ultra-sensitive detection of differentially expressed proteins [s] C Ammar, M Gruber, G Csaba, R Zimmer Molecular & Cellular Proteomics 18 (9), 1880-1892, 2019 | 38 | 2019 |
| The amino acid homoarginine inhibits atherogenesis by modulating T-cell function K Nitz, M Lacy, M Bianchini, K Wichapong, IA Kücükgöze, CA Bonfiglio, ... Circulation research 131 (8), 701-712, 2022 | 31 | 2022 |
| Accurate label-free quantification by directLFQ to compare unlimited numbers of proteomes C Ammar, JP Schessner, S Willems, AC Michaelis, M Mann Molecular & Cellular Proteomics 22 (7), 2023 | 22 | 2023 |
| Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival S Schink, C Ammar, YF Chang, R Zimmer, M Basan Molecular Systems Biology 18 (12), e11160, 2022 | 21 | 2022 |
| .(2022) Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund Mol. Syst. Biol 18, e10798, 0 | 13 | |
| The energy requirements of ion homeostasis determine the lifespan of starving bacteria S Schink, M Polk, E Athaide, A Mukherjee, C Ammar, X Liu, S Oh, ... bioRxiv, 2021.11. 22.469587, 2021 | 10 | 2021 |
| Multi-reference spectral library yields almost complete coverage of heterogeneous LC-MS/MS data sets C Ammar, E Berchtold, G Csaba, A Schmidt, A Imhof, R Zimmer Journal of proteome research 18 (4), 1553-1566, 2019 | 10 | 2019 |
| Ultra-High Sensitivity Mass Spectrometry Quantifies Single-Cell Proteome Changes upon Perturbation. bioRxiv 2020, 1–32 ADD Brunner, M Thielert, CG Vasilopoulou, C Ammar, F Coscia, A Mund, ... DOI 10 (2020.12), 22.423933, 0 | 9 | |
| Survival dynamics of starving bacteria are determined by ion homeostasis that maintains plasmolysis S Schink, M Polk, E Athaide, A Mukherjee, C Ammar, X Liu, S Oh, ... Nature Physics, 1-7, 2024 | 5 | 2024 |
| EmpiReS: differential analysis of gene expression and alternative splicing G Csaba, E Berchtold, A Hadziahmetovic, M Gruber, C Ammar, R Zimmer bioRxiv, 2020.08. 23.234237, 2020 | 4 | 2020 |
| AlphaDIA enables End-to-End Transfer Learning for Feature-Free Proteomics G Wallmann, P Skowronek, V Brennsteiner, M Lebedev, M Thielert, ... bioRxiv, 2024.05. 28.596182, 2024 | 2 | 2024 |
| Context-based analysis of mass spectrometry proteomics data C Ammar lmu, 2020 | 1 | 2020 |
| Detecting Differential Alternative Splicing in Mass Spectrometry-based Proteomics Data C Ammar, G Csaba, A Hadziahmetovic, CG Vasilopoulou, M Gruber, ... bioRxiv, 2023.09. 19.558203, 2023 | | 2023 |
