Lidija Berke

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M. Eric SchranzProfessor, Biosystematics, Wageningen UniversityDirección de correo verificada de wur.nl
Richard MichelmoreProfessor, Genome Center Director, University of California, DavisDirección de correo verificada de ucdavis.edu
Berend SnelUtrecht UniversityDirección de correo verificada de uu.nl
Gabino Sanchez-PerezHudson River BiotechnologyDirección de correo verificada de hrb.bio
Beth RowanAssistant Professor, Oregon State UniversityDirección de correo verificada de oregonstate.edu
Alan C. ChristensenProfessor of BiologyDirección de correo verificada de unl.edu
Theo Van der LeeSenior Researcher Wageningen-URDirección de correo verificada de wur.nl
Dirk-Jan M. van WorkumWageningen University & ResearchDirección de correo verificada de wur.nl
Sandra SmitBioinformatics, Wageningen UniversityDirección de correo verificada de wur.nl
Dick de Ridderprofessor bioinformatics, Wageningen University & Research CentreDirección de correo verificada de wur.nl
Albert J. R. HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center and Utrecht UniversityDirección de correo verificada de uu.nl
Frank L. MenkeHead of Proteomics, the Sainsbury LaboratoryDirección de correo verificada de tsl.ac.uk
Balázs BrankovicsWesterdijk Fungal Biodiversity Institute, KNAWDirección de correo verificada de wi.knaw.nl
Michael F SeidlAssociate Professor, Theoretical Biology & BioinformaticsDirección de correo verificada de uu.nl
Guido Van den AckervekenProfessor and chair of Translational Plant Biology, Department of Biology, Utrecht University, NLDirección de correo verificada de uu.nl
Nora R. LudwigPlant-Microbe Interactions, Utrecht UniversityDirección de correo verificada de uu.nl
Henri van de Geest, van de Geest H C,...Genetwister technologiesDirección de correo verificada de genetwister.nl
Henriette SchluepmannUtrecht UniversityDirección de correo verificada de uu.nl
Shabaz MohammedAssociate Professor of Proteomics, University of OxfordDirección de correo verificada de bioch.ox.ac.uk
Hongtao ZhangPhD, Queen Mary university of londonDirección de correo verificada de qmul.ac.uk

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Lidija Berke

Genetwister Technologies

Dirección de correo verificada de genetwister.nl

Bioinformatics Comparative genomics Genome evolution


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
The alternative reality of plant mitochondrial DNA: One ring does not rule them all A Kozik, BA Rowan, D Lavelle, L Berke, ME Schranz, RW Michelmore, ... PLoS genetics 15 (8), e1008373, 2019	274	2019
DOWNY MILDEW RESISTANT 6 and DMR 6‐LIKE OXYGENASE 1 are partially redundant but distinct suppressors of immunity in Arabidopsis T Zeilmaker, NR Ludwig, J Elberse, MF Seidl, L Berke, A Van Doorn, ... The Plant Journal 81 (2), 210-222, 2015	230	2015
The PLETHORA gene regulatory network guides growth and cell differentiation in Arabidopsis roots L Santuari, GF Sanchez-Perez, M Luijten, B Rutjens, I Terpstra, L Berke, ... The Plant Cell 28 (12), 2937-2951, 2016	181	2016
Metabolism control over growth: a case for trehalose-6-phosphate in plants H Schluepmann, L Berke, GF Sanchez-Perez Journal of experimental botany 63 (9), 3379-3390, 2012	129	2012
Quantitative phosphoproteomics after auxin-stimulated lateral root induction identifies a SNX1 phosphorylation site required for growth H Zhang, H Zhou, L Berke, AJR Heck, S Mohammed, B Scheres, ... Mol Cell Proteomics, 2013	109	2013
Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set CA ten Hove, Z Bochdanovits, VMA Jansweijer, FG Koning, L Berke, ... Plant molecular biology, 1-15, 2011	104	2011
Targeted quantitative phosphoproteomics approach for the detection of phospho-tyrosine signaling in plants SC Mithoe, PJ Boersema, L Berke, B Snel, AJR Heck, FLH Menke Journal of Proteome Research 11 (1), 438–448, 2012	51	2012
The plant Polycomb repressive complex 1 (PRC1) existed in the ancestor of seed plants and has a complex duplication history L Berke, B Snel BMC evolutionary biology 15, 1-10, 2015	42	2015
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool EM Jonkheer, B Brankovics, IM Houwers, JM van der Wolf, PJM Bonants, ... BMC genomics 22, 1-18, 2021	38	2021
The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves AI Evkaikina, L Berke, MA Romanova, E Proux-Wéra, AN Ivanova, ... Genome Biology and Evolution 9 (9), 2444-2460, 2017	36	2017
PanTools v3: functional annotation, classification and phylogenomics EM Jonkheer, DJM van Workum, S Sheikhizadeh Anari, B Brankovics, ... Bioinformatics 38 (18), 4403-4405, 2022	29	2022
Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis L Berke, GF Sanchez-Perez, B Snel Genome Biology 13 (10), R94, 2012	22	2012
The Histone Modification H3K27me3 Is Retained after Gene Duplication and Correlates with Conserved Noncoding Sequences in Arabidopsis L Berke, B Snel Genome biology and evolution 6 (3), 572-579, 2014	15	2014
What can the phylogeny of class I KNOX genes and their expression patterns in land plants tell us about the evolution of shoot development? AI Maksimova, L Berke, MG Salgado, EA Klimova, K Pawlowski, ... Botanical Journal of the Linnean Society 195 (3), 254-280, 2021	11	2021
Fusarium oxysporum effector clustering version 2: An updated pipeline to infer host range MA Brenes Guallar, L Fokkens, M Rep, L Berke, P Van Dam Frontiers in Plant Science 13, 1012688, 2022	8*	2022
Genome assembly and analysis of Lactuca virosa: implications for lettuce breeding W Xiong, DJM van Workum, L Berke, LV Bakker, E Schijlen, FFM Becker, ... G3: Genes, Genomes, Genetics 13 (11), jkad204, 2023	6	2023
The genome of Lactuca saligna, a wild relative of lettuce, provides insight into non‐host resistance to the downy mildew Bremia lactucae W Xiong, L Berke, R Michelmore, DJM van Workum, FFM Becker, ... The Plant Journal 115 (1), 108-126, 2023	5	2023
Phylogenomic analysis provides insights into MADS-box and TCP gene diversification and floral development of the Asteraceae, supported by de novo genome and … W Xiong, J Risse, L Berke, T Zhao, H Van de Geest, C Oplaat, M Busscher, ... Frontiers in Plant Science 14, 1198909, 2023	4	2023
Hop EST resources for marker development B Javornik, L Berke, Z Luthar, J Jakše, A Čerenak, JM Jeltsch, A Forster, ... II International Humulus Symposium 848, 65-72, 2008	1	2008
Exploring intra‐and intergenomic variation in haplotype‐resolved pangenomes EM Jonkheer, D de Ridder, TAJ van der Lee, JR de Haan, L Berke, S Smit Plant Biotechnology Journal, 2024		2024

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