| Exon skipping is correlated with exon circularization S Kelly, C Greenman, PR Cook, A Papantonis Journal of molecular biology 427 (15), 2414-2417, 2015 | 394 | 2015 |
| Recent Zika virus isolates induce premature differentiation of neural progenitors in human brain organoids E Gabriel, A Ramani, U Karow, M Gottardo, K Natarajan, LM Gooi, ... Cell stem cell 20 (3), 397-406. e5, 2017 | 316 | 2017 |
| Transcription factories: genome organization and gene regulation A Papantonis, PR Cook Chemical reviews 113 (11), 8683-8705, 2013 | 262 | 2013 |
| Nonspecific bridging-induced attraction drives clustering of DNA-binding proteins and genome organization CA Brackley, S Taylor, A Papantonis, PR Cook, D Marenduzzo Proceedings of the National Academy of Sciences 110 (38), E3605-E3611, 2013 | 259 | 2013 |
| Enhancers and silencers: an integrated and simple model for their function P Kolovos, TA Knoch, FG Grosveld, PR Cook, A Papantonis Epigenetics & chromatin 5, 1-8, 2012 | 216 | 2012 |
| HMGB2 loss upon senescence entry disrupts genomic organization and induces CTCF clustering across cell types A Zirkel, M Nikolic, K Sofiadis, JP Mallm, CA Brackley, H Gothe, ... Molecular cell 70 (4), 730-744. e6, 2018 | 211 | 2018 |
| A wave of nascent transcription on activated human genes Y Wada, Y Ohta, M Xu, S Tsutsumi, T Minami, K Inoue, D Komura, ... Proceedings of the National Academy of Sciences 106 (43), 18357-18361, 2009 | 202 | 2009 |
| Spatial chromosome folding and active transcription drive DNA fragility and formation of oncogenic MLL translocations HJ Gothe, BAM Bouwman, EG Gusmao, R Piccinno, G Petrosino, ... Molecular cell 75 (2), 267-283. e12, 2019 | 156 | 2019 |
| TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed A Papantonis, T Kohro, S Baboo, JD Larkin, B Deng, P Short, S Tsutsumi, ... The EMBO journal 31 (23), 4404-4414, 2012 | 147 | 2012 |
| Human brain organoids assemble functionally integrated bilateral optic vesicles E Gabriel, W Albanna, G Pasquini, A Ramani, N Josipovic, A Mariappan, ... Cell stem cell 28 (10), 1740-1757. e8, 2021 | 145 | 2021 |
| Active RNA polymerases: mobile or immobile molecular machines? A Papantonis, JD Larkin, Y Wada, Y Ohta, S Ihara, T Kodama, PR Cook PLoS biology 8 (7), e1000419, 2010 | 122 | 2010 |
| Ageing-associated changes in transcriptional elongation influence longevity C Debès, A Papadakis, S Grönke, Ö Karalay, LS Tain, A Mizi, ... Nature 616 (7958), 814-821, 2023 | 109 | 2023 |
| Enhancer–promoter contact formation requires RNAPII and antagonizes loop extrusion S Zhang, N Übelmesser, M Barbieri, A Papantonis Nature genetics 55 (5), 832-840, 2023 | 106 | 2023 |
| RNA polymerase II is required for spatial chromatin reorganization following exit from mitosis S Zhang, N Übelmesser, N Josipovic, G Forte, JA Slotman, M Chiang, ... Science advances 7 (43), eabg8205, 2021 | 106 | 2021 |
| The proteomes of transcription factories containing RNA polymerases I, II or III S Melnik, B Deng, A Papantonis, S Baboo, IM Carr, PR Cook Nature methods 8 (11), 963-968, 2011 | 97 | 2011 |
| Forces driving the three‐dimensional folding of eukaryotic genomes A Rada‐Iglesias, FG Grosveld, A Papantonis Molecular systems biology 14 (6), e8214, 2018 | 94 | 2018 |
| Senescence‐associated DNA methylation is stochastically acquired in subpopulations of mesenchymal stem cells J Franzen, A Zirkel, J Blake, B Rath, V Benes, A Papantonis, W Wagner Aging cell 16 (1), 183-191, 2017 | 91 | 2017 |
| HMGB1 coordinates SASP‐related chromatin folding and RNA homeostasis on the path to senescence K Sofiadis, N Josipovic, M Nikolic, Y Kargapolova, N Übelmesser, ... Molecular systems biology 17 (6), e9760, 2021 | 81 | 2021 |
| Pulmonary infection by SARS-CoV-2 induces senescence accompanied by an inflammatory phenotype in severe COVID-19: possible implications for viral mutagenesis K Evangelou, D Veroutis, K Paschalaki, PG Foukas, N Lagopati, ... European Respiratory Journal 60 (2), 2022 | 79 | 2022 |
| Redundant and specific roles of cohesin STAG subunits in chromatin looping and transcriptional control V Casa, MM Gines, EG Gusmao, JA Slotman, A Zirkel, N Josipovic, E Oole, ... Genome Research 30 (4), 515-527, 2020 | 79 | 2020 |
