Evguenia Kopylova

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Rob KnightWolfe Family Chair at Rady Children's; Director, Center for Microbiome Innovation; Professor, UCSDDirección de correo verificada de ucsd.edu
Qiyun ZhuArizona State UniversityDirección de correo verificada de asu.edu
Laurent Noéassociate professor (computer science) enseignant-chercheur (informatique), Lille (France)Dirección de correo verificada de univ-lille.fr
Helene TouzetCNRS, Lille (France)Dirección de correo verificada de univ-lille.fr
Se Jin SongUniversity of California San DiegoDirección de correo verificada de ucsd.edu
Gregory D. Sepich-PooreMD/PhD Candidate at UC San Diego School of MedicineDirección de correo verificada de cloud.ucsd.edu
Sandip Pravin PatelUniversity of California San DiegoDirección de correo verificada de ucsd.edu
Jessica L. MetcalfProfessor, Colorado State University, Fort Collins, CODirección de correo verificada de colostate.edu
Tomasz KościółekSano Centre for Computational MedicineDirección de correo verificada de sanoscience.org
Serena FraraccioSr Scientist at Micronoma Inc.Dirección de correo verificada de micronoma.com
Robert K. HeatonUniversity of California San DiegoDirección de correo verificada de ucsd.edu
Sandrine Javorschi-Miller-MontgomeryColibriteDirección de correo verificada de colibrite.com
Carolina CarpenterUniversity of California San DiegoDirección de correo verificada de ucsd.edu
Austin Swafford, PhDPresident, IBRADirección de correo verificada de biomedalliance.org
Daniel McDonaldAmerican Gut, Knight Lab, Department of Pediatrics, UCSDDirección de correo verificada de ucsd.edu
Zhenjiang Zech Xustate key lab of food science and resources, nuDirección de correo verificada de ucsd.edu
Jose A Navas-MolinaUniversity of California, San DiegoDirección de correo verificada de eng.ucsd.edu
J Gregory CaporasoNorthern Arizona UniversityDirección de correo verificada de nau.edu
James T. MortonDirección de correo verificada de gutzanalytics.com
Luke R. ThompsonAssociate Research Professor, NOAA Northern Gulf InstituteDirección de correo verificada de noaa.gov

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Evguenia Kopylova

Host-microbiome data analysis | Managing Director, Clarity Genomics

Dirección de correo verificada de clarity-genomics.com - Página principal

Bioinformatics Metagenomics Metabolomics Machine Learning


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data E Kopylova, L Noé, H Touzet Bioinformatics 28 (24), 3211-3217, 2012	2688	2012
A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2527	2017
Deblur rapidly resolves single-nucleotide community sequence patterns A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ... MSystems 2 (2), 10.1128/msystems. 00191-16, 2017	1524	2017
RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020	956	2020
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ... Nature communications 11 (1), 2500, 2020	548	2020
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019	313	2019
Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ... Microbiome 3, 1-10, 2015	202	2015
Open-source sequence clustering methods improve the state of the art E Kopylova, JA Navas-Molina, C Mercier, ZZ Xu, F Mahé, Y He, HW Zhou, ... MSystems 1 (1), 10.1128/msystems. 00003-15, 2016	165	2016
Origin of microbial biomineralization and magnetotaxis during the Archean W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ... Proceedings of the National Academy of Sciences 114 (9), 2171-2176, 2017	134	2017
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nat Commun 11: 2500 F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...	71	2020
A comparison of index-based Lempel-Ziv LZ77 factorization algorithms A Al-Hafeedh, M Crochemore, L Ilie, E Kopylova, WF Smyth, G Tischler, ... ACM Computing Surveys (CSUR) 45 (1), 1-17, 2012	42	2012
A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ... PeerJ PrePrints 3, e934v2, 2015	36	2015
The three squares lemma revisited E Kopylova, WF Smyth Journal of Discrete Algorithms 11, 3-14, 2012	25	2012
Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene 43 (15), 1127-1148, 2024	15	2024
B. infantis EVC001 Is Well-Tolerated and Improves Human Milk Oligosaccharide Utilization in Preterm Infants in the Neonatal Intensive Care Unit S Bajorek, RM Duar, M Corrigan, C Matrone, KA Winn, S Norman, ... Frontiers in Pediatrics 9, 795970, 2022	13	2022
Reply to: caution regarding the specificities of pan-cancer microbial structure GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ... bioRxiv, 2023.02. 10.528049, 2023	9	2023
Reply to Wang and Chen: An ancient origin of magnetotactic bacteria W Lin, GA Paterson, Q Zhu, Y Wang, E Kopylova, Y Li, R Knight, ... Proceedings of the National Academy of Sciences 114 (26), E5019-E5020, 2017	9	2017
Multi-omic approach to decipher the impact of skincare products with pre/postbiotics on skin microbiome and metabolome M Li, J Mao, I Diaz, E Kopylova, AV Melnik, AA Aksenov, CD Tipton, ... Frontiers in Medicine 10, 1165980, 2023	8	2023
Deciphering metatranscriptomic data E Kopylova, L Noé, C Da Silva, JF Berthelot, A Alberti, JM Aury, H Touzet RNA Bioinformatics, 279-291, 2014	7	2014
Microbiome analyses of blood and tissues suggest cancer diagnostic approach. Nat 579: 567–574 GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...	6*	2020

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