Jiri Damborsky

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Jan BrezovskýFaculty of Biology, Adam Mickiewicz University in PoznanDirección de correo verificada de amu.edu.pl
Jan ŠtouračMasaryk University, BrnoDirección de correo verificada de mail.muni.cz
Stanislav MazurenkoTeam leader, AI in Protein Engineering, Masaryk UniversityDirección de correo verificada de mail.muni.cz
Antonín PavelkaMasaryk UniversityDirección de correo verificada de fi.muni.cz
Barbora Kozlikovaassoc. prof., Masaryk UniversityDirección de correo verificada de fi.muni.cz
Miloš MusilBrno University of Technology / Loschmidt laboratoriesDirección de correo verificada de stud.fit.vutbr.cz
Antonín KunkaTechnical University of DenmarkDirección de correo verificada de dtu.dk
Artur GóraBiotechnology Centre Silesian University of TechnologyDirección de correo verificada de artgora.com
Lukas DanielInstitute of Applied BiotechnologiesDirección de correo verificada de mail.muni.cz
Uwe BornscheuerProfessor, Biotechnology and Enzyme Catalysis, Greifswald UniversityDirección de correo verificada de uni-greifswald.de
Rebecca WadeHeidelberg Institute for Theoretical Studies and Heidelberg UniversityDirección de correo verificada de h-its.org
Jaroslav BendlIcahn School of Medicine at Mount Sinai, New YorkDirección de correo verificada de mssm.edu
Dick B. JanssenUniversity of GroningenDirección de correo verificada de rug.nl
Pavel DvořákAssociate Professor and PI at Masaryk University, Brno, Czech RepublicDirección de correo verificada de sci.muni.cz
Pavlina RezacovaHead of Structural Biology, Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech RepublicDirección de correo verificada de uochb.cas.cz
Jiri SochorProfessor Emeritus, Faculty of Informatics, Masaryk UniversityDirección de correo verificada de fi.muni.cz
Ondřej StrnadResearch Scientist at KAUSTDirección de correo verificada de kaust.edu.sa
Yukari SatoTohoku UniversityDirección de correo verificada de ige.tohoku.ac.jp
Morteza KhabiriAssistant Professor of Biology, Quinnipiac UniversityDirección de correo verificada de quinnipiac.edu
Lukas ChrastLoschmidt Laboratories, Masaryk UniversityDirección de correo verificada de mail.muni.cz

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Jiri Damborsky

Masaryk University

Dirección de correo verificada de chemi.muni.cz - Página principal

Protein engineering Protein design


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures E Chovancova, A Pavelka, P Benes, O Strnad, J Brezovsky, B Kozlikova, ... Public Library of Science 8 (10), e1002708, 2012	1283	2012
PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ... PLoS computational biology 10 (1), e1003440, 2014	831	2014
Strategies for stabilization of enzymes in organic solvents V Stepankova, S Bidmanova, T Koudelakova, Z Prokop, R Chaloupkova, ... Acs Catalysis 3 (12), 2823-2836, 2013	675	2013
CAVER: a new tool to explore routes from protein clefts, pockets and cavities M Petřek, M Otyepka, P Banáš, P Košinová, J Koča, J Damborský BMC bioinformatics 7, 1-9, 2006	649	2006
Machine learning in enzyme engineering S Mazurenko, Z Prokop, J Damborsky ACS Catalysis 10 (2), 1210-1223, 2019	382	2019
Bioremediation 3.0: engineering pollutant-removing bacteria in the times of systemic biology P Dvořák, PI Nikel, J Damborský, V de Lorenzo Biotechnology advances 35 (7), 845-866, 2017	363	2017
CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018	334	2018
Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate M Pavlova, M Klvana, Z Prokop, R Chaloupkova, P Banas, M Otyepka, ... Nature chemical biology 5 (10), 727-733, 2009	323	2009
Gates of enzymes A Gora, J Brezovsky, J Damborsky Chemical reviews 113 (8), 5871-5923, 2013	288	2013
Exacerbation of substrate toxicity by IPTG in Escherichia coli BL21(DE3) carrying a synthetic metabolic pathway P Dvorak, L Chrast, PI Nikel, R Fedr, K Soucek, M Sedlackova, ... Microbial cell factories 14, 1-15, 2015	282	2015
HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information L Sumbalova, J Stourac, T Martinek, D Bednar, J Damborsky Nucleic Acids Research 46 (W1), W356-W362, 2018	260	2018
Computational tools for designing and engineering enzymes J Damborsky, J Brezovsky Current opinion in chemical biology 19, 8-16, 2014	260	2014
HotSpot Wizard: a web server for identification of hot spots in protein engineering A Pavelka, E Chovancova, J Damborsky Nucleic acids research 37 (suppl_2), W376-W383, 2009	243	2009
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ... Nucleic acids research 47 (W1), W414-W422, 2019	222	2019
Crystal Structure of the Haloalkane Dehalogenase from Sphingomonas paucimobilis UT26^, J Marek, J Vévodová, IK Smatanová, Y Nagata, LA Svensson, J Newman, ... Biochemistry 39 (46), 14082-14086, 2000	211	2000
PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský PLoS computational biology 12 (5), e1004962, 2016	203	2016
Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel R Chaloupková, J Sýkorová, Z Prokop, A Jesenská, M Monincová, ... Journal of Biological Chemistry 278 (52), 52622-52628, 2003	200	2003
Purification and characterization of a haloalkane dehalogenase of a new substrate class from a gamma-hexachlorocyclohexane-degrading bacterium, Sphingomonas paucimobilis UT26 Y Nagata, K Miyauchi, J Damborsky, K Manova, A Ansorgova, M Takagi Applied and Environmental Microbiology 63 (9), 3707-3710, 1997	198	1997
Haloalkane dehalogenases: biotechnological applications T Koudelakova, S Bidmanova, P Dvorak, A Pavelka, R Chaloupkova, ... Biotechnology journal 8 (1), 32-45, 2013	191	2013
Biodegradation of 1, 2, 3-trichloropropane through directed evolution and heterologous expression of a haloalkane dehalogenase gene T Bosma, J Damborský, G Stucki, DB Janssen Applied and environmental microbiology 68 (7), 3582-3587, 2002	191	2002

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