| hECA: the cell-centric assembly of a cell atlas S Chen, Y Luo, H Gao, F Li, Y Chen, J Li, R You, M Hao, H Bian, X Xi, ... Iscience 25 (5), 2022 | 30 | 2022 |
| ITHscore: comprehensive quantification of intra-tumor heterogeneity in NSCLC by multi-scale radiomic features J Li, Z Qiu, C Zhang, S Chen, M Wang, Q Meng, H Lu, L Wei, H Lv, ... European Radiology 33 (2), 893-903, 2023 | 28 | 2023 |
| Benchmarking multi-omics integration algorithms across single-cell RNA and ATAC data C Xiao, Y Chen, Q Meng, L Wei, X Zhang Briefings in Bioinformatics 25 (2), bbae095, 2024 | 10 | 2024 |
| scDecouple: decoupling cellular response from infected proportion bias in scCRISPR-seq Q Meng, L Wei, K Ma, M Shi, X Lin, JWK Ho, Y Li, X Zhang Briefings in Bioinformatics 25 (2), bbae011, 2024 | 1 | 2024 |
| A human ensemble cell atlas (hECA) enables in data cell sorting S Chen, Y Luo, H Gao, F Li, J Li, Y Chen, R You, M Hao, H Bian, X Xi, ... bioRxiv, 2021.07. 21.453289, 2021 | 1 | 2021 |
| scRecover: Discriminating True and False Zeros in Single‐Cell RNA‐Seq Data for Imputation Z Miao, X Lin, J Li, J Ho, Q Meng, X Zhang Statistics in Medicine 44 (5), e10334, 2025 | | 2025 |
| A mechanism-informed deep neural network enables prioritization of regulators that drive cell state transitions X Xi, J Li, J Jia, Q Meng, C Li, X Wang, L Wei, X Zhang Nature Communications 16 (1), 1284, 2025 | | 2025 |
| Systematic analysis on the horse-shoe-like effect in PCA plots of scRNA-seq data N Shah, Q Meng, Z Zou, X Zhang Bioinformatics Advances 4 (1), vbae109, 2024 | | 2024 |
| A generic reference defined by consensus peaks for scATAC-seq data analysis Q Meng, X Wu, W Chen, Y Zhao, C Li, Z Wei, J Li, X Xi, S Chen, C Zhang, ... bioRxiv, 2023.05. 30.542889, 2023 | | 2023 |
| scDecouple: Decoupling cellular response and infection bias in scCRISPR-seq Q Meng, M Shi, L Wei, Y Li, X Zhang | | |