| Deep learning in bioinformatics: Introduction, application, and perspective in the big data era Y Li, C Huang, L Ding, Z Li, Y Pan, X Gao Methods 166, 4-21, 2019 | 406 | 2019 |
| A rapid, accurate and machine-agnostic segmentation and quantification method for CT-based COVID-19 diagnosis L Zhou, Z Li, J Zhou, H Li, Y Chen, Y Huang, D Xie, L Zhao, M Fan, ... IEEE transactions on medical imaging 39 (8), 2638-2652, 2020 | 214 | 2020 |
| A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics H Li, J Zhou, Z Li, S Chen, X Liao, B Zhang, R Zhang, Y Wang, S Sun, ... Nature Communications 14 (1), 1548, 2023 | 123 | 2023 |
| Computer-aided drug repurposing for cancer therapy: approaches and opportunities to challenge anticancer targets C Mottini, F Napolitano, Z Li, X Gao, L Cardone Seminars in cancer biology 68, 59-74, 2021 | 102 | 2021 |
| Contextualized point-of-interest recommendation P Han, Z Li, Y Liu, P Zhao, J Li, H Wang, S Shang International Joint Conferences on Artificial Intelligence, 2020 | 82 | 2020 |
| DeeReCT-PolyA: a robust and generic deep learning method for PAS identification Z Xia, Y Li, B Zhang, Z Li, Y Hu, W Chen, X Gao Bioinformatics 35 (14), 2371-2379, 2019 | 56 | 2019 |
| Applications of deep learning in understanding gene regulation Z Li, E Gao, J Zhou, W Han, X Xu, X Gao Cell Reports Methods 3 (1), 2023 | 39 | 2023 |
| Supportnet: solving catastrophic forgetting in class incremental learning with support data Y Li, Z Li, L Ding, Y Pan, C Huang, Y Hu, W Chen, X Gao arXiv preprint arXiv:1806.02942, 2018 | 39 | 2018 |
| Predicting the antigenic evolution of SARS-COV-2 with deep learning W Han, N Chen, X Xu, A Sahil, J Zhou, Z Li, H Zhong, E Gao, R Zhang, ... Nature Communications 14 (1), 3478, 2023 | 37 | 2023 |
| Vision transformer-based weakly supervised histopathological image analysis of primary brain tumors Z Li, Y Cong, X Chen, J Qi, J Sun, T Yan, H Yang, J Liu, E Lu, L Wang, J Li, ... IScience 26 (1), 2023 | 37 | 2023 |
| DeeReCT-APA: prediction of alternative polyadenylation site usage through deep learning Z Li, Y Li, B Zhang, Y Li, Y Long, J Zhou, X Zou, M Zhang, Y Hu, W Chen, ... Genomics, Proteomics and Bioinformatics 20 (3), 483-495, 2022 | 31 | 2022 |
| PPML-Omics: a privacy-preserving federated machine learning method protects patients’ privacy in omic data J Zhou, S Chen, Y Wu, H Li, B Zhang, L Zhou, Y Hu, Z Xiang, Z Li, N Chen, ... Science Advances 10 (5), eadh8601, 2024 | 27 | 2024 |
| Detecting thoracic diseases via representation learning with adaptive sampling H Wang, YY Yang, Y Pan, P Han, ZX Li, HG Huang, SZ Zhu Neurocomputing 406, 354-360, 2020 | 23 | 2020 |
| Annotating TSSs in multiple cell types based on DNA sequence and RNA-seq data via DeeReCT-TSS J Zhou, B Zhang, H Li, L Zhou, Z Li, Y Long, W Han, M Wang, H Cui, J Li, ... Genomics, Proteomics and Bioinformatics 20 (5), 959-973, 2022 | 8 | 2022 |
| Audit to Forget: A Unified Method to Revoke Patients' Private Data in Intelligent Healthcare J Zhou, H Li, X Liao, B Zhang, W He, Z Li, L Zhou, X Gao arXiv preprint arXiv:2302.09813, 2023 | 6 | 2023 |
| SupportNet: a novel incremental learning framework through deep learning and support data Y Li, Z Li, L Ding, Y Hu, W Chen, X Gao bioRxiv, 317578, 2018 | 5 | 2018 |
| An isoform-resolution transcriptomic atlas of colorectal cancer from long-read single-cell sequencing Z Li, B Zhang, JJ Chan, H Tabatabaeian, QY Tong, XH Chew, X Fan, ... Cell Genomics 4 (9), 2024 | 4 | 2024 |
| Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning X Xu, J Zhou, C Zhu, Q Zhan, Z Li, R Zhang, Y Wang, X Liao, X Gao F1000Research 12, 757, 2024 | 3 | 2024 |
| Rapid, accurate and machine-agnostic segmentation and quantification method and device for coronavirus ct-based diagnosis X Gao, Z Longxi, Z Li US Patent App. 17/917,036, 2023 | 1 | 2023 |
| AI identifies potent inducers of breast cancer stem cell differentiation based on adversarial learning from gene expression data Z Li, A Napolitano, M Fedele, X Gao, F Napolitano Briefings in Bioinformatics 25 (3), bbae207, 2024 | | 2024 |
