Timothy E Sweeney

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Purvesh KhatriStanford UniversityDirección de correo verificada de stanford.edu
Oliver LiesenfeldInflammatix IncDirección de correo verificada de inflammatix.com
David C RawlingseqWellDirección de correo verificada de seqwell.com
Ljubomir ButurovicInflammatix Inc.Dirección de correo verificada de inflammatix.com
Winston A. HaynesSenior Data Scientist @ BigHat Biosciences, previously @ Serimmune and StanfordDirección de correo verificada de bighatbio.com
Evangelos Giamarellos-BourboulisNational and Kapodistrian University of Athens, Medical SchoolDirección de correo verificada de med.uoa.gr
Angela RogersAssociate Professor of Pulmonary and Critical Care, Stanford UniversityDirección de correo verificada de stanford.edu
Francesco VallaniaGroup Leader - Translational Science @ Freenome, formerly @ ITI, Stanford UniversityDirección de correo verificada de stanford.edu
Roland LuethyInflammatix Inc.Dirección de correo verificada de luethy.net
Cristina M. TatoChan Zuckerberg BiohubDirección de correo verificada de czbiohub.org
Raquel BartzBrigham and Women's HospitalDirección de correo verificada de bwh.harvard.edu
Erika BongenBristol-Myers SquibbDirección de correo verificada de bms.com
Shane LofgrenManifold BioDirección de correo verificada de manifold.bio
Tej D. AzadNeurosurgery resident, Johns Hopkins HospitalDirección de correo verificada de jhmi.edu
Michele DonatoSenior Bioinformatics Research Engineer, FreenomeDirección de correo verificada de freenome.com
Y. D. HeInflammatixDirección de correo verificada de inflammatix.com
Yehudit HasinInflammatixDirección de correo verificada de inflammatix.com
Simone ThairPostdoctoral Research Fellow Stanford UniveristyDirección de correo verificada de stanford.edu
Michael MayhewInflammatix, Inc.Dirección de correo verificada de inflammatix.com
Jason AndrewsProfessor, Stanford University School of MedicineDirección de correo verificada de stanford.edu

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Timothy E Sweeney

Inflammatix Inc; previously @ Stanford

Dirección de correo verificada de alumni.stanford.edu - Página principal

Sepsis Transcriptomics Bioinformatics Diagnostics Precision Medicine


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Genome-wide expression for diagnosis of pulmonary tuberculosis: a multicohort analysis TE Sweeney, L Braviak, CM Tato, P Khatri The Lancet Respiratory Medicine 4 (3), 213-224, 2016	447	2016
A comprehensive time-course–based multicohort analysis of sepsis and sterile inflammation reveals a robust diagnostic gene set TE Sweeney, A Shidham, HR Wong, P Khatri Science translational medicine 7 (287), 287ra71-287ra71, 2015	345	2015
Robust classification of bacterial and viral infections via integrated host gene expression diagnostics TE Sweeney, HR Wong, P Khatri Science translational medicine 8 (346), 346ra91-346ra91, 2016	340	2016
The human gut microbiome: a review of the effect of obesity and surgically induced weight loss TE Sweeney, JM Morton JAMA surgery 148 (6), 563-569, 2013	334	2013
Heme oxygenase-1 couples activation of mitochondrial biogenesis to anti-inflammatory cytokine expression CA Piantadosi, CM Withers, RR Bartz, NC MacGarvey, P Fu, TE Sweeney, ... Journal of Biological Chemistry 286 (18), 16374-16385, 2011	299	2011
Unsupervised analysis of transcriptomics in bacterial sepsis across multiple datasets reveals three robust clusters TE Sweeney, TD Azad, M Donato, WA Haynes, TM Perumal, R Henao, ... Critical care medicine 46 (6), 915-925, 2018	290	2018
Redefining critical illness DM Maslove, B Tang, M Shankar-Hari, PR Lawler, DC Angus, JK Baillie, ... Nature medicine 28 (6), 1141-1148, 2022	240	2022
A community approach to mortality prediction in sepsis via gene expression analysis TE Sweeney, TM Perumal, R Henao, M Nichols, JA Howrylak, AM Choi, ... Nature communications 9 (1), 694, 2018	209	2018
Integrated, multi-cohort analysis identifies conserved transcriptional signatures across multiple respiratory viruses M Andres-Terre, HM McGuire, Y Pouliot, E Bongen, TE Sweeney, ... Immunity 43 (6), 1199-1211, 2015	200	2015
Learning statistical models of phenotypes using noisy labeled training data V Agarwal, T Podchiyska, JM Banda, V Goel, TI Leung, EP Minty, ... Journal of the American Medical Informatics Association 23 (6), 1166-1173, 2016	186	2016
Complement pathway amplifies caspase-11–dependent cell death and endotoxin-induced sepsis severity BA Napier, SW Brubaker, TE Sweeney, P Monette, GH Rothmeier, ... Journal of Experimental Medicine 213 (11), 2365-2382, 2016	160	2016
Metabolic surgery: action via hormonal milieu changes, changes in bile acids or gut microbiota? A summary of the literature TE Sweeney, JM Morton Best practice & research Clinical gastroenterology 28 (4), 727-740, 2014	154	2014
Methods to increase reproducibility in differential gene expression via meta-analysis TE Sweeney, WA Haynes, F Vallania, JP Ioannidis, P Khatri Nucleic acids research 45 (1), e1-e1, 2017	152	2017
Empowering multi-cohort gene expression analysis to increase reproducibility WA Haynes, F Vallania, C Liu, E Bongen, A Tomczak, M Andres-Terrè, ... Pacific symposium on biocomputing 2017, 144-153, 2017	142	2017
Sepsis subclasses: a framework for development and interpretation KM DeMerle, DC Angus, JK Baillie, E Brant, CS Calfee, J Carcillo, ... Critical care medicine 49 (5), 748-759, 2021	131	2021
Assessment of validity of a blood-based 3-gene signature score for progression and diagnosis of tuberculosis, disease severity, and treatment response HC Warsinske, AM Rao, FMF Moreira, PCP Santos, AB Liu, M Scott, ... JAMA network open 1 (6), e183779-e183779, 2018	127	2018
Encouraging mindfulness in medical house staff via smartphone app: a pilot study L Wen, TE Sweeney, L Welton, M Trockel, L Katznelson Academic psychiatry 41, 646-650, 2017	124	2017
Identifying distinct subgroups of ICU patients: a machine learning approach KC Vranas, JK Jopling, TE Sweeney, MC Ramsey, AS Milstein, ... Critical care medicine 45 (10), 1607-1615, 2017	108	2017
A generalizable 29-mRNA neural-network classifier for acute bacterial and viral infections MB Mayhew, L Buturovic, R Luethy, U Midic, AR Moore, JA Roque, ... Nature communications 11 (1), 1177, 2020	101	2020
Benchmarking sepsis gene expression diagnostics using public data TE Sweeney, P Khatri Critical care medicine 45 (1), 1-10, 2017	99	2017

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