| MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu Bioinformatics 33 (24), 3909-3916, 2017 | 253 | 2017 |
| Differential regulation of flower transpiration during abiotic stress in annual plants R Sinha, SI Zandalinas, Y Fichman, S Sen, S Zeng, A Gómez‐Cadenas, ... New Phytologist 235 (2), 611-629, 2022 | 56 | 2022 |
| 12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in … AN Poudel, RE Holtsclaw, A Kimberlin, S Sen, S Zeng, T Joshi, Z Lei, ... Plant and Cell Physiology 60 (10), 2152-2166, 2019 | 55 | 2019 |
| PGen: large-scale genomic variations analysis workflow and browser in SoyKB Y Liu, SM Khan, J Wang, M Rynge, Y Zhang, S Zeng, S Chen, ... BMC bioinformatics 17, 177-186, 2016 | 39 | 2016 |
| The evolution of soybean knowledge base (SoyKB) T Joshi, J Wang, H Zhang, S Chen, S Zeng, B Xu, D Xu Plant genomics databases: methods and protocols, 149-159, 2017 | 33 | 2017 |
| G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers S Zeng, Z Mao, Y Ren, D Wang, D Xu, T Joshi Nucleic acids research 49 (W1), W228-W236, 2021 | 28 | 2021 |
| Transcriptomics analysis reveals new insights into the roles of Notch1 signaling on macrophage polarization CP Hans, N Sharma, S Sen, S Zeng, R Dev, Y Jiang, A Mahajan, T Joshi Scientific reports 9 (1), 7999, 2019 | 28 | 2019 |
| Knowledge Base Commons (KBCommons) v1. 1: a universal framework for multi-omics data integration and biological discoveries S Zeng, Z Lyu, SRK Narisetti, D Xu, T Joshi BMC genomics 20, 1-16, 2019 | 21 | 2019 |
| Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer AJ Stuckel, W Zhang, X Zhang, S Zeng, U Dougherty, R Mustafi, Q Zhang, ... Cancers 12 (3), 539, 2020 | 17 | 2020 |
| Knowledge Base Commons (KBCommons) v1. 0: A multi OMICS'web-based data integration framework for biological discoveries S Zeng, Z Lyu, SRK Narisetti, D Xu, T Joshi 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018 | 17 | 2018 |
| S‐PLM: Structure‐Aware Protein Language Model via Contrastive Learning Between Sequence and Structure D Wang, M Pourmirzaei, UL Abbas, S Zeng, N Manshour, F Esmaili, ... Advanced Science 12 (5), 2404212, 2025 | 15 | 2025 |
| Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes R Deshmukh, N Rana, Y Liu, S Zeng, G Agarwal, H Sonah, R Varshney, ... Physiologia Plantarum 171 (4), 756-770, 2021 | 14 | 2021 |
| MUFOLD-DB: a processed protein structure database for protein structure prediction and analysis Z He, C Zhang, Y Xu, S Zeng, J Zhang, D Xu BMC genomics 15, 1-7, 2014 | 14 | 2014 |
| The Allele Catalog Tool: a web-based interactive tool for allele discovery and analysis YO Chan, N Dietz, S Zeng, J Wang, S Flint-Garcia, MN Salazar-Vidal, ... BMC genomics 24 (1), 107, 2023 | 13 | 2023 |
| A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes M Škrabišová, N Dietz, S Zeng, YO Chan, J Wang, Y Liu, J Biová, T Joshi, ... Journal of Advanced Research 42, 117-133, 2022 | 13 | 2022 |
| SNPViz v2. 0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations S Zeng, M Škrabišová, Z Lyu, YO Chan, K Bilyeu, T Joshi 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020 | 12 | 2020 |
| Application of SNPViz v2. 0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes S Zeng, M Škrabišová, Z Lyu, YO Chan, N Dietz, K Bilyeu, T Joshi International Journal of Data Mining and Bioinformatics 25 (1-2), 65-85, 2021 | 11 | 2021 |
| Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit J Wang, S Sidharth, S Zeng, Y Jiang, YO Chan, Z Lyu, T McCubbin, ... Physiologia Plantarum 174 (2), e13672, 2022 | 10 | 2022 |
| Epigenetic DNA modifications upregulate SPRY2 in human colorectal cancers AJ Stuckel, S Zeng, Z Lyu, W Zhang, X Zhang, U Dougherty, R Mustafi, ... Cells 10 (10), 2632, 2021 | 9 | 2021 |
| Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction S Zeng, D Wang, L Jiang, D Xu Genome research 34 (9), 1445-1454, 2024 | 6 | 2024 |
Trupti JoshiUniversity of Missouri, Department of Health Management and InformaticsDirección de correo verificada de missouri.edu