| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366-2382, 2007 | 2826 | 2007 |
| WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research DN Slenter, M Kutmon, K Hanspers, A Riutta, J Windsor, N Nunes, ... Nucleic acids research 46 (D1), D661-D667, 2018 | 972 | 2018 |
| WikiPathways: pathway editing for the people AR Pico, T Kelder, MP Van Iersel, K Hanspers, BR Conklin, C Evelo PLoS biology 6 (7), e184, 2008 | 815 | 2008 |
| WikiPathways: connecting communities M Martens, A Ammar, A Riutta, A Waagmeester, DN Slenter, K Hanspers, ... Nucleic acids research 49 (D1), D613-D621, 2021 | 730 | 2021 |
| WikiPathways: building research communities on biological pathways T Kelder, MP Van Iersel, K Hanspers, M Kutmon, BR Conklin, CT Evelo, ... Nucleic acids research 40 (D1), D1301-D1307, 2012 | 645 | 2012 |
| WikiPathways: capturing the full diversity of pathway knowledge M Kutmon, A Riutta, N Nunes, K Hanspers, EL Willighagen, A Bohler, ... Nucleic acids research 44 (D1), D488-D494, 2016 | 507 | 2016 |
| Presenting and exploring biological pathways with PathVisio MP van Iersel, T Kelder, AR Pico, K Hanspers, S Coort, BR Conklin, ... BMC bioinformatics 9, 1-9, 2008 | 439 | 2008 |
| GenMAPP 2: new features and resources for pathway analysis N Salomonis, K Hanspers, AC Zambon, K Vranizan, SC Lawlor, ... BMC bioinformatics 8, 1-12, 2007 | 331 | 2007 |
| GO-Elite: a flexible solution for pathway and ontology over-representation AC Zambon, S Gaj, I Ho, K Hanspers, K Vranizan, CT Evelo, BR Conklin, ... Bioinformatics 28 (16), 2209-2210, 2012 | 301 | 2012 |
| exRNA atlas analysis reveals distinct extracellular RNA cargo types and their carriers present across human biofluids OD Murillo, W Thistlethwaite, J Rozowsky, SL Subramanian, R Lucero, ... Cell 177 (2), 463-477. e15, 2019 | 290 | 2019 |
| Spotted long oligonucleotide arrays for human gene expression analysis A Barczak, MW Rodriguez, K Hanspers, LL Koth, YC Tai, BM Bolstad, ... Genome research 13 (7), 1775-1785, 2003 | 230 | 2003 |
| The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services MP van Iersel, AR Pico, T Kelder, J Gao, I Ho, K Hanspers, BR Conklin, ... BMC bioinformatics 11, 1-7, 2010 | 219 | 2010 |
| Fibrin-targeting immunotherapy protects against neuroinflammation and neurodegeneration JK Ryu, VA Rafalski, A Meyer-Franke, RA Adams, SB Poda, ... Nature immunology 19 (11), 1212-1223, 2018 | 196 | 2018 |
| Transcriptional profiling and therapeutic targeting of oxidative stress in neuroinflammation AS Mendiola, JK Ryu, S Bardehle, A Meyer-Franke, KKH Ang, C Wilson, ... Nature immunology 21 (5), 513-524, 2020 | 174 | 2020 |
| Mining biological pathways using WikiPathways web services T Kelder, AR Pico, K Hanspers, MP Van Iersel, C Evelo, BR Conklin PloS one 4 (7), e6447, 2009 | 172 | 2009 |
| Wikidata as a knowledge graph for the life sciences A Waagmeester, G Stupp, S Burgstaller-Muehlbacher, BM Good, M Griffith, ... Elife 9, e52614, 2020 | 137 | 2020 |
| WikiPathways 2024: next generation pathway database A Agrawal, H Balcı, K Hanspers, SL Coort, M Martens, DN Slenter, ... Nucleic acids research 52 (D1), D679-D689, 2024 | 133 | 2024 |
| Gene expression profiles during human CD4+ T cell differentiation MS Lee, K Hanspers, CS Barker, AP Korn, JM McCune International immunology 16 (8), 1109-1124, 2004 | 117 | 2004 |
| Extracellular RNAs are associated with insulin resistance and metabolic phenotypes R Shah, V Murthy, M Pacold, K Danielson, K Tanriverdi, MG Larson, ... Diabetes care 40 (4), 546-553, 2017 | 110 | 2017 |
| Alternative splicing in the differentiation of human embryonic stem cells into cardiac precursors N Salomonis, B Nelson, K Vranizan, AR Pico, K Hanspers, A Kuchinsky, ... PLoS computational biology 5 (11), e1000553, 2009 | 103 | 2009 |
