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Casper Goverde
Casper Goverde
PhD student, EPFL
Dirección de correo verificada de epfl.ch
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De novo design of protein interactions with learned surface fingerprints
P Gainza, S Wehrle, A Van Hall-Beauvais, A Marchand, A Scheck, ...
Nature 617 (7959), 176-184, 2023
1422023
De novo protein design by inversion of the AlphaFold structure prediction network
CA Goverde, B Wolf, H Khakzad, S Rosset, BE Correia
Protein Science 32 (6), e4653, 2023
632023
An atlas of protein homo-oligomerization across domains of life
H Schweke, M Pacesa, T Levin, CA Goverde, P Kumar, Y Duhoo, ...
Cell 187 (4), 999-1010. e15, 2024
622024
A new age in protein design empowered by deep learning
H Khakzad, I Igashov, A Schneuing, C Goverde, M Bronstein, B Correia
Cell Systems 14 (11), 925-939, 2023
462023
Opportunities and challenges in design and optimization of protein function
D Listov, CA Goverde, BE Correia, SJ Fleishman
Nature Reviews Molecular Cell Biology, 1-15, 2024
452024
Computational design of soluble and functional membrane protein analogues
CA Goverde, M Pacesa, N Goldbach, LJ Dornfeld, PEM Balbi, ...
Nature, 1-10, 2024
202024
Computational design of soluble functional analogues of integral membrane proteins
CA Goverde, M Pacesa, N Goldbach, LJ Dornfeld, PEM Balbi, ...
BioRxiv, 2023.05. 09.540044, 2023
132023
BindCraft: one-shot design of functional protein binders
M Pacesa, L Nickel, C Schellhaas, J Schmidt, E Pyatova, L Kissling, ...
bioRxiv, 2024.09. 30.615802, 2024
82024
AF2BIND: predicting ligand-binding sites using the pair representation of AlphaFold2
A Gazizov, A Lian, C Goverde, S Ovchinnikov, NF Polizzi
bioRxiv, 2023.10. 15.562410, 2023
72023
De novo design of site-specific protein interactions with learned surface fingerprints
P Gainza, S Wehrle, A Van Hall-Beauvais, A Marchand, A Scheck, ...
bioRxiv, 2022.06. 16.496402, 2022
72022
Exploring “dark-matter” protein folds using deep learning
Z Harteveld, A Van Hall-Beauvais, I Morozova, J Southern, C Goverde, ...
Cell systems 15 (10), 898-910. e5, 2024
42024
Beat Fierz, Didier Trono, Henning Stahlberg, Michael Bronstein, and Bruno E. Correia. De novo design of protein interactions with learned surface fingerprints
P Gainza, S Wehrle, A Van Hall-Beauvais, A Marchand, A Scheck, ...
Nature 617 (7959), 176-184, 2023
42023
Structures of the Foamy virus fusion protein reveal an unexpected link with the F protein of paramyxo-and pneumoviruses
I Fernández, F Bontems, D Brun, Y Coquin, CA Goverde, BE Correia, ...
Science Advances 10 (41), eado7035, 2024
22024
Machine Learning in Protein Science De Novo Design of Site-Specific Protein Binders Using Surface Fingerprints
V Hall-Beauvais, P Gainza, S Wehrle, A Scheck, A Marchand, Z Harteveld, ...
Protein Science 32, 2023
2023
LPDI
S Balharry, L Bonati, J Bonet Martinez, SM Buckley, KM Castro Gilabert, ...
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