| Multiple sequence alignment-based RNA language model and its application to structural inference Y Zhang, M Lang, J Jiang, Z Gao, F Xu, T Litfin, K Chen, J Singh, X Huang, ... Nucleic Acids Research 52 (1), e3-e3, 2024 | 44 | 2024 |
| UNI-RNA: universal pre-trained models revolutionize RNA research X Wang*, R Gu*, Z Chen*, Y Zhang*, Y Li, X Ji, G Ke, H Wen bioRxiv, 2023.07. 11.548588, 2023 | 16 | 2023 |
| Atomas: Hierarchical Alignment on Molecule-Text for Unified Molecule Understanding and Generation Y Zhang, G Ye, C Yuan, B Han, LK Huang, J Yao, W Liu, Y Rong ICLR 2025, 2024 | 4 | 2024 |
| Functional Protein Design with Local Domain Alignment C Yuan, S Li, G Ye, Y Zhang, LK Huang, W Huang, W Liu, J Yao, Y Rong KDD 2025, 2024 | 3 | 2024 |
| MethylGPT: a foundation model for the DNA methylome K Ying*, J Song*, H Cui*, Y Zhang*, S Li, X Chen, H Liu, A Eames, ... bioRxiv, 2024.10. 30.621013, 2024 | 2 | 2024 |
| RNAGenesis: Foundation Model for Enhanced RNA Sequence Generation and Structural Insights Z Zhang*, L Chao*, RF Jin*, Y Zhang*, G Zhou*, Y Yang, Y Yang, ... bioRxiv, 2024.12. 30.630826, 2024 | | 2024 |
