| Multivariable association discovery in population-scale meta-omics studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS computational biology 17 (11), e1009442, 2021 | 1453 | 2021 |
| Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium R Sinha, G Abu-Ali, E Vogtmann, AA Fodor, B Ren, A Amir, E Schwager, ... Nature biotechnology 35 (11), 1077-1086, 2017 | 481 | 2017 |
| Experimental design and quantitative analysis of microbial community multiomics H Mallick, S Ma, EA Franzosa, T Vatanen, XC Morgan, C Huttenhower Genome biology 18, 1-16, 2017 | 186 | 2017 |
| Bone marrow is a major parasite reservoir in Plasmodium vivax infection N Obaldia III, E Meibalan, JM Sa, S Ma, MA Clark, P Mejia, ... MBio 9 (3), 10.1128/mbio. 00625-18, 2018 | 171 | 2018 |
| Plasmodium gametocytes display homing and vascular transmigration in the host bone marrow M De Niz, E Meibalan, P Mejia, S Ma, NMB Brancucci, C Agop-Nersesian, ... Science advances 4 (5), eaat3775, 2018 | 110 | 2018 |
| Transcriptional profiling defines dynamics of parasite tissue sequestration during malaria infection KG Pelle, K Oh, K Buchholz, V Narasimhan, R Joice, DA Milner, ... Genome medicine 7, 1-20, 2015 | 91 | 2015 |
| Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin S Ma, D Shungin, H Mallick, M Schirmer, LH Nguyen, R Kolde, ... Genome Biology 23 (1), 208, 2022 | 67 | 2022 |
| A statistical model for describing and simulating microbial community profiles S Ma, B Ren, H Mallick, YS Moon, E Schwager, S Maharjan, TL Tickle, ... PLoS computational biology 17 (9), e1008913, 2021 | 54 | 2021 |
| Naturally acquired immunity against immature Plasmodium falciparum gametocytes KW Dantzler, S Ma, P Ngotho, WJR Stone, D Tao, S Rijpma, M De Niz, ... Science translational medicine 11 (495), eaav3963, 2019 | 52 | 2019 |
| Highly multiplexed image analysis of intestinal tissue sections in patients with inflammatory bowel disease A Kondo, S Ma, MYY Lee, V Ortiz, D Traum, J Schug, B Wilkins, NA Terry, ... Gastroenterology 161 (6), 1940-1952, 2021 | 44 | 2021 |
| Continuity of transcriptomes among colorectal cancer subtypes based on meta-analysis S Ma, S Ogino, P Parsana, R Nishihara, Z Qian, J Shen, K Mima, ... Genome biology 19, 1-14, 2018 | 34 | 2018 |
| Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes KN Thompson, KS Bonham, NE Ilott, GJ Britton, P Colmenero, SJ Bullers, ... Science Translational Medicine 15 (706), eabn4722, 2023 | 31 | 2023 |
| A scoping review of using Large Language Models (LLMs) to investigate Electronic Health Records (EHRs) L Li, J Zhou, Z Gao, W Hua, L Fan, H Yu, L Hagen, Y Zhang, TL Assimes, ... arXiv preprint arXiv:2405.03066, 2024 | 25 | 2024 |
| Effects of Lifetime Exposures to Environmental Contaminants on the Adult Gut Microbiome KN Thompson, Y Oulhote, P Weihe, JE Wilkinson, S Ma, H Zhong, J Li, ... Environmental Science & Technology 56 (23), 16985-16995, 2022 | 18 | 2022 |
| Examining the potential of ChatGPT on biomedical information retrieval: fact-checking drug-disease associations Z Gao, L Li, S Ma, Q Wang, L Hemphill, R Xu Annals of Biomedical Engineering 52 (8), 1919-1927, 2024 | 12 | 2024 |
| Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes Z Mei, F Wang, A Bhosle, D Dong, R Mehta, A Ghazi, Y Zhang, Y Liu, ... Nature Medicine 30 (8), 2265-2276, 2024 | 12 | 2024 |
| Influence of Sex on Respiratory Syncytial Virus Genotype Infection Frequency and Nasopharyngeal Microbiome Y Tan, MH Shilts, C Rosas-Salazar, V Puri, N Fedorova, RA Halpin, S Ma, ... Journal of Virology 97 (3), e01472-22, 2023 | 5 | 2023 |
| GammaGateR: semi-automated marker gating for single-cell multiplexed imaging J Xiong, H Kaur, CN Heiser, ET McKinley, JT Roland, RJ Coffey, ... Bioinformatics, btae356, 2024 | 4 | 2024 |
| A tensor decomposition model for longitudinal microbiome studies S Ma, H Li The Annals of Applied Statistics 17 (2), 1105-1126, 2023 | 4 | 2023 |
| Recent advances in deep learning and language models for studying the microbiome B Yan, Y Nam, L Li, RA Deek, H Li, S Ma Frontiers in Genetics 15, 1494474, 2025 | 1 | 2025 |
