| The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases R Caspi, T Altman, R Billington, K Dreher, H Foerster, CA Fulcher, ... Nucleic acids research 42 (D1), D459-D471, 2014 | 4674* | 2014 |
| The MetaCyc database of metabolic pathways and enzymes-a 2019 update R Caspi, R Billington, IM Keseler, A Kothari, M Krummenacker, ... Nucleic acids research 48 (D1), D445-D453, 2020 | 1002 | 2020 |
| The MetaCyc database of metabolic pathways and enzymes R Caspi, R Billington, CA Fulcher, IM Keseler, A Kothari, ... Nucleic acids research 46 (D1), D633-D639, 2018 | 916 | 2018 |
| The BioCyc collection of microbial genomes and metabolic pathways PD Karp, R Billington, R Caspi, CA Fulcher, M Latendresse, A Kothari, ... Briefings in bioinformatics 20 (4), 1085-1093, 2019 | 879 | 2019 |
| The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 IM Keseler, A Mackie, A Santos-Zavaleta, R Billington, ... Nucleic acids research 45 (D1), D543-D550, 2017 | 686 | 2017 |
| Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology PD Karp, SM Paley, M Krummenacker, M Latendresse, JM Dale, TJ Lee, ... Briefings in bioinformatics 11 (1), 40-79, 2010 | 609 | 2010 |
| MetaCyc: a multiorganism database of metabolic pathways and enzymes R Caspi, H Foerster, CA Fulcher, R Hopkinson, J Ingraham, P Kaipa, ... Nucleic acids research 34 (suppl_1), D511-D516, 2006 | 472 | 2006 |
| Bacterially-mediated mineral formation: insights into manganese (II) oxidation from molecular genetic and biochemical studies BM Tebo, WC Ghiorse, LG Van Waasbergen, PL Siering, R Caspi Reviews in mineralogy 35, 225-266, 1997 | 428 | 1997 |
| Pathway Tools version 19.0 update: software for pathway/genome informatics and systems biology PD Karp, M Latendresse, SM Paley, M Krummenacker, QD Ong, ... Briefings in bioinformatics 17 (5), 877-890, 2016 | 303 | 2016 |
| The EcoCyc database in 2021 IM Keseler, S Gama-Castro, A Mackie, R Billington, C Bonavides-Martínez, ... Frontiers in microbiology 12, 711077, 2021 | 220 | 2021 |
| A systematic comparison of the MetaCyc and KEGG pathway databases T Altman, M Travers, A Kothari, R Caspi, PD Karp BMC bioinformatics 14, 1-15, 2013 | 200 | 2013 |
| The ecocyc database PD Karp, WK Ong, S Paley, R Billington, R Caspi, C Fulcher, A Kothari, ... EcoSal Plus 8 (1), 10.1128/ecosalplus. ESP-0006-2018, 2018 | 194 | 2018 |
| Pathway Tools version 23.0 update: software for pathway/genome informatics and systems biology PD Karp, PE Midford, R Billington, A Kothari, M Krummenacker, ... Briefings in bioinformatics 22 (1), 109-126, 2021 | 179 | 2021 |
| Creation of a Genome-Wide Metabolic Pathway Database for Populus trichocarpa Using a New Approach for Reconstruction and Curation of Metabolic Pathways … P Zhang, K Dreher, A Karthikeyan, A Chi, A Pujar, R Caspi, P Karp, ... Plant Physiology 153 (4), 1479-1491, 2010 | 151 | 2010 |
| The pathway tools pathway prediction algorithm PD Karpe, M Latendresse, R Caspi Standards in genomic sciences 5, 424-429, 2011 | 145 | 2011 |
| c-Type Cytochromes and Manganese Oxidation in Pseudomonas putida MnB1 R Caspi, BM Tebo, MG Haygood Applied and environmental Microbiology 64 (10), 3549-3555, 1998 | 144 | 1998 |
| The challenge of constructing, classifying, and representing metabolic pathways R Caspi, K Dreher, PD Karp FEMS microbiology letters 345 (2), 85-93, 2013 | 96 | 2013 |
| A survey of metabolic databases emphasizing the MetaCyc family PD Karp, R Caspi Archives of toxicology 85, 1015-1033, 2011 | 92 | 2011 |
| A broad host range replicon with different requirements for replication initiation in three bacterial species R Caspi, M Pacek, G Consiglieri, DR Helinski, A Toukdarian, I Konieczny The EMBO Journal 20 (12), 3262-3271, 2001 | 74 | 2001 |
| The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases PD Karp, R Caspi, H Foerster, CA Fulcher, P Kaipa, M Krummenacker, ... Nucleic Acids Res 36, D623-D631, 2008 | 63 | 2008 |