| RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... Nature 579 (7800), 567-574, 2020 | 956 | 2020 |
| Mass spectrometry searches using MASST M Wang, AK Jarmusch, F Vargas, AA Aksenov, JM Gauglitz, K Weldon, ... Nature biotechnology 38 (1), 23-26, 2020 | 234 | 2020 |
| A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities JP Shaffer, CS Carpenter, C Martino, RA Salido, JJ Minich, MK Bryant, ... Biotechniques 73 (1), 34-46, 2022 | 47 | 2022 |
| Gastrointestinal surgery for inflammatory bowel disease persistently lowers microbiome and metabolome diversity X Fang, Y Vázquez-Baeza, E Elijah, F Vargas, G Ackermann, ... Inflammatory bowel diseases 27 (5), 603-616, 2021 | 43 | 2021 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... BioTechniques, 2021 | 31 | 2021 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ... Microbiome 9 (1), 1-13, 2021 | 28* | 2021 |
| A 3000 year record of Caribbean reef urchin communities reveals causes and consequences of long‐term decline in Diadema antillarum KL Cramer, A O’Dea, C Carpenter, RD Norris Ecography 41 (1), 164-173, 2018 | 26 | 2018 |
| Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene 43 (15), 1127-1148, 2024 | 15 | 2024 |
| Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs JM Gauglitz, JT Morton, A Tripathi, S Hansen, M Gaffney, C Carpenter, ... Msystems 5 (2), 10.1128/msystems. 00635-19, 2020 | 14 | 2020 |
| Swapping metagenomics preprocessing pipeline components offers speed and sensitivity increases G Armstrong, C Martino, J Morris, B Khaleghi, J Kang, J DeReus, Q Zhu, ... Msystems 7 (2), e01378-21, 2022 | 10 | 2022 |
| Reply to: caution regarding the specificities of pan-cancer microbial structure GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ... bioRxiv, 2023.02. 10.528049, 2023 | 9 | 2023 |
| Microbiome analyses of blood and tissues suggest cancer diagnostic approach. Nat 579: 567–574 GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ... | 6* | 2020 |
| Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs. mSystems 5: e00635-19 JM Gauglitz, JT Morton, A Tripathi, S Hansen, M Gaffney, C Carpenter, ... PubMed PubMed Central, 2020 | 4 | 2020 |
| Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution HE Epstein, T Brown, AO Akinrinade, R McMinds, FJ Pollock, D Sonett, ... Animal Microbiome 7 (1), 1, 2025 | 2 | 2025 |
| Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome BC Taylor, M Sheikh Andalibi, S Wandro, KC Weldon, GD Sepich-Poore, ... Microorganisms 11 (4), 1022, 2023 | 1 | 2023 |
| Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine S Dasgupta, I Maricic, J Tang, S Wandro, K Weldon, CS Carpenter, ... ImmunoHorizons 5 (12), 953-971, 2021 | 1 | 2021 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (vol 70, pg 149, 2021) J Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... BIOTECHNIQUES 76 (3), 1-1, 2024 | | 2024 |
| Correction: Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene 43 (20), 1579, 2024 | | 2024 |
| Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases D Roush, D McDonald, A Gonazlez, JP Shaffer, C Carpenter, M Estaki, ... | | 2022 |
