Ivan Kulakovskiy

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Vsevolod MakeevCancer Research UK, ManchesterDirección de correo verificada de manchester.ac.uk
Ilya VorontsovVavilov Institute of General GeneticsDirección de correo verificada de vigg.ru
Yulia A MedvedevaResearch Center of Biotechnology RASDirección de correo verificada de biengi.ac.ru
Fedor KolpakovBiosoft.RuDirección de correo verificada de biosoft.ru
Eliseeva IrinaInstitute of protein research RASDirección de correo verificada de vega.protres.ru
Artem KasianovBIOPOLIS-CiBioDirección de correo verificada de cibio.up.pt
Sergey DmitrievBelozersky Institute of Physico-Chemical Biology, Moscow State UniversityDirección de correo verificada de belozersky.msu.ru
Alexander Favorovresearch [email protected]; senior fellow [email protected]Dirección de correo verificada de sensi.org
Dmitry PenzarVavilov Institute of General Genetics, FBB Lomonosov MSUDirección de correo verificada de kodomo.fbb.msu.ru
Semyon KolmykovInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russian FederationDirección de correo verificada de bionet.nsc.ru
Dmitry KuprashEngelhardt Institute of Molecular BiologyDirección de correo verificada de eimb.ru
Anton SchwartzDepartment of Human Biology of the University of HaifaDirección de correo verificada de univ.haifa.ac.il
Marina FridmanResearcher of Vavilov Institute of General GeneticsDirección de correo verificada de vigg.ru
Aleksandra S. AnisimovaMax Perutz Labs, University of Vienna, Medical University of Vienna, Vienna BioCenter (VBC), ViennaDirección de correo verificada de univie.ac.at
Aleksey PeninVavilov Institute of General GeneticsDirección de correo verificada de de.bio.msu.ru
Eugene F. BaulinGroup Leader, Laboratory of RNA Algorithms, IMol Polish Academy of SciencesDirección de correo verificada de imol.institute
Grigory KhimulyaPrivateDirección de correo verificada de alumni.harvard.edu
Valentina BoevaAssistant Prof., ETH Zürich, Department of Computer ScienceDirección de correo verificada de inf.ethz.ch
Vadim GladyshevProfessor of Medicine, Brigham and Women's Hospital, Harvard Medical SchoolDirección de correo verificada de rics.bwh.harvard.edu
Artyom A. EgorovLund University, Department of Experimental Medical Science | PhD studentDirección de correo verificada de med.lu.se

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Ivan Kulakovskiy

Institute of Protein Research RAS

Dirección de correo verificada de vigg.ru - Página principal

bioinformatics gene regulation sequence analysis high-throughput sequencing


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
A promoter-level mammalian expression atlas TF Consortium Nature 507 (7493), 462-470, 2014	1808	2014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ... Nucleic acids research 46 (D1), D252-D259, 2018	866	2018
EpiFactors: a comprehensive database of human epigenetic factors and complexes YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ... Database 2015, bav067, 2015	314	2015
Effects of cytosine methylation on transcription factor binding sites YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ... BMC Genomics 15 (1), 119, 2014	306	2014
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ... Nucleic Acids Research 41 (D1), D195-D202, 2013	291	2013
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ... Nucleic acids research 44 (D1), D116-D125, 2016	269	2016
GTRD: an integrated view of transcription regulation S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ... Nucleic Acids Research 49 (D1), D104-D111, 2021	215	2021
Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010	188	2010
Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome Research 30 (7), 1060-1072, 2020	157	2020
Intergenic, gene terminal, and intragenic CpG islands in the human genome Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ... BMC genomics 11 (1), 48, 2010	115	2010
Multifaceted deregulation of gene expression and protein synthesis with age AS Anisimova, MB Meerson, MV Gerashchenko, IV Kulakovskiy, ... PNAS 117 (27), 15581-15590, 2020	107	2020
Jaccard index based similarity measure to compare transcription factor binding site models IE Vorontsov, IV Kulakovskiy, VJ Makeev Algorithms for Molecular Biology 8 (1), 23, 2013	92	2013
Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature Communications 12 (1), 1-15, 2021	89	2021
Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ... Nucleic acids research 44 (15), 7228-7241, 2016	82	2016
From binding motifs in ChIP-seq data to improved models of transcription factor binding sites I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ... Journal of Bioinformatics and Computational Biology, 2013	82	2013
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ... Genome biology 21, 1-18, 2020	65	2020
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ... Stem Cell Reports 5 (2), 207-220, 2015	59	2015
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ... Human mutation 40 (9), 1280-1291, 2019	58	2019
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors IE Vorontsov, IA Eliseeva, A Zinkevich, M Nikonov, S Abramov, A Boytsov, ... Nucleic Acids Research 52 (D1), D154-D163, 2024	50	2024
CpG traffic lights are markers of regulatory regions in human genome AV Lioznova, AM Khamis, AV Artemov, E Besedina, V Ramensky, ... BMC Genomics 20 (1), 102, 2019	49	2019

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