Davis J McCarthy

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchDirección de correo verificada de wehi.edu.au
Mark D. RobinsonFull Professor of Statistical Genomics, University of ZurichDirección de correo verificada de mls.uzh.ch
John MarioniGenentechDirección de correo verificada de gene.com
Aaron LunGenentech, Inc.Dirección de correo verificada de gene.com
Yunshun ChenLaboratory Head, Walter and Eliza Hall Institute of Medical ResearchDirección de correo verificada de wehi.edu.au
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergDirección de correo verificada de dkfz.de
Marc Jan BonderPostdoctoral researcher UMCGDirección de correo verificada de umcg.nl
Sarah A. TeichmannUniversity of CambridgeDirección de correo verificada de cam.ac.uk
Kieran R CampbellTorontoDirección de correo verificada de lunenfeld.ca
Wolfgang HuberEMBL - European Molecular Biology LaboratoryDirección de correo verificada de embl.org
Yuanhua HuangAssistant Professor, Univeristy of Hong KongDirección de correo verificada de hku.hk
Florian BuettnerFrankfurt University/DKFZDirección de correo verificada de med.uni-frankfurt.de
Daniel D SeatonScientific director, Computational biology, GSKDirección de correo verificada de gsk.com
Manuel A. RivasAssistant Professor, Department of Biomedical Data Science, Stanford UniversityDirección de correo verificada de stanford.edu
Peter HumburgStatistician, UNSWDirección de correo verificada de unsw.edu.au
Kyle Jeffrie GaultonWinkler Endowed Chair in Type 1 Diabetes; Associate Professor of Pediatrics, UCSDDirección de correo verificada de ucsd.edu
Alexander KanapinSt Petersburg UniversityDirección de correo verificada de spbu.ru
Daniel GaffneyVP, Genomics, BioMarin Pharmaceutical LtdDirección de correo verificada de bmrn.com
Alicia OshlackPeter MacCallum Cancer CentreDirección de correo verificada de petermac.org
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchDirección de correo verificada de wehi.edu.au

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Davis J McCarthy

Head, Bioinformatics and Cellular Genomics, St Vincent's Institute of Medical Research

Dirección de correo verificada de svi.edu.au - Página principal

Statistics Genetics Gene Expression


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data MD Robinson, DJ McCarthy, GK Smyth bioinformatics 26 (1), 139-140, 2010	39812	2010
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation DJ McCarthy, Y Chen, GK Smyth Nucleic acids research 40 (10), 4288-4297, 2012	5344	2012
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor ATL Lun, DJ McCarthy, JC Marioni F1000Research 5, 2016	1641	2016
Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R DJ McCarthy, KR Campbell, ATL Lun, QF Wills Bioinformatics 33 (8), 1179-1186, 2017	1624	2017
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ... Nature protocols 8 (9), 1765-1786, 2013	1341	2013
The genetic architecture of type 2 diabetes C Fuchsberger, J Flannick, TM Teslovich, A Mahajan, V Agarwala, ... Nature 536 (7614), 41-47, 2016	1305	2016
Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020	1161	2020
Testing significance relative to a fold-change threshold is a TREAT DJ McCarthy, GK Smyth Bioinformatics 25 (6), 765-771, 2009	734	2009
Classification of low quality cells from single-cell RNA-seq data T Ilicic, JK Kim, AA Kolodziejczyk, FO Bagger, DJ McCarthy, JC Marioni, ... Genome biology 17, 1-15, 2016	733	2016
Common genetic variation drives molecular heterogeneity in human iPSCs H Kilpinen, A Goncalves, A Leha, V Afzal, K Alasoo, S Ashford, S Bala, ... Nature 546 (7658), 370-375, 2017	640	2017
Factors influencing success of clinical genome sequencing across a broad spectrum of disorders JC Taylor, HC Martin, S Lise, J Broxholme, JB Cazier, A Rimmer, ... Nature genetics 47 (7), 717-726, 2015	443	2015
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects E Mereu, A Lafzi, C Moutinho, C Ziegenhain, DJ McCarthy, ... Nature biotechnology 38 (6), 747-755, 2020	418	2020
Detecting differential expression in RNA-sequence data using quasi-likelihood with shrunken dispersion estimates SP Lund, D Nettleton, DJ McCarthy, GK Smyth Statistical applications in genetics and molecular biology 11 (5), 2012	364	2012
Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data TS Andrews, VY Kiselev, D McCarthy, M Hemberg Nature protocols 16 (1), 1-9, 2021	292	2021
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression ASE Cuomo, DD Seaton, DJ McCarthy, I Martinez, MJ Bonder, ... Nature communications 11 (1), 810, 2020	278	2020
Choice of transcripts and software has a large effect on variant annotation DJ McCarthy, P Humburg, A Kanapin, MA Rivas, K Gaulton, ... Genome medicine 6, 1-16, 2014	239	2014
Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference Y Huang, DJ McCarthy, O Stegle Genome biology 20, 1-12, 2019	238	2019
Whole-genome sequencing of bladder cancers reveals somatic CDKN1A mutations and clinicopathological associations with mutation burden JB Cazier, SR Rao, CM McLean, AK Walker, BJ Wright, EEM Jaeger, ... Nature communications 5 (1), 3756, 2014	175	2014
f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq F Buettner, N Pratanwanich, DJ McCarthy, JC Marioni, O Stegle Genome biology 18, 1-13, 2017	140	2017
Visualization of biomedical data SI O'Donoghue, BF Baldi, SJ Clark, AE Darling, JM Hogan, S Kaur, ... Annual Review of Biomedical Data Science 1 (1), 275-304, 2018	111	2018

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