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Sinu Paul
Sinu Paul
Bioinformatics Scientist, Rancho Biosciences
Dirección de correo verificada de ranchobiosciences.com
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NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
B Reynisson, B Alvarez, S Paul, B Peters, M Nielsen
Nucleic acids research 48 (W1), W449-W454, 2020
15282020
NetMHCpan-4.0: improved peptide–MHC class I interaction predictions integrating eluted ligand and peptide binding affinity data
V Jurtz, S Paul, M Andreatta, P Marcatili, B Peters, M Nielsen
The Journal of Immunology 199 (9), 3360-3368, 2017
14082017
The immune epitope database and analysis resource in epitope discovery and synthetic vaccine design
W Fleri, S Paul, SK Dhanda, S Mahajan, X Xu, B Peters, A Sette
Frontiers in immunology 8, 278, 2017
4852017
IEDB-AR: immune epitope database—analysis resource in 2019
SK Dhanda, S Mahajan, S Paul, Z Yan, H Kim, MC Jespersen, V Jurtz, ...
Nucleic acids research 47 (W1), W502-W506, 2019
3522019
HLA class I alleles are associated with peptide-binding repertoires of different size, affinity, and immunogenicity
S Paul, D Weiskopf, MA Angelo, J Sidney, B Peters, A Sette
The Journal of Immunology 191 (12), 5831-5839, 2013
3072013
TepiTool: a pipeline for computational prediction of T cell epitope candidates
S Paul, J Sidney, A Sette, B Peters
Current protocols in immunology 114 (1), 18.19. 1-18.19. 24, 2016
2402016
Prior Dengue virus exposure shapes T cell immunity to Zika virus in humans
A Grifoni, J Pham, J Sidney, PH O'Rourke, S Paul, B Peters, SR Martini, ...
Journal of virology 91 (24), 10.1128/jvi. 01469-17, 2017
1982017
The Human CD8+ T Cell Responses Induced by a Live Attenuated Tetravalent Dengue Vaccine Are Directed against Highly Conserved Epitopes
D Weiskopf, MA Angelo, DJ Bangs, J Sidney, S Paul, B Peters, ...
Journal of virology 89 (1), 120-128, 2015
1952015
Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes
S Paul, CSL Arlehamn, TJ Scriba, MBC Dillon, C Oseroff, D Hinz, ...
Journal of immunological methods 422, 28-34, 2015
1902015
A Quantitative Analysis of Complexity of Human Pathogen-Specific CD4 T Cell Responses in Healthy M. tuberculosis Infected South Africans
CS Lindestam Arlehamn, DM McKinney, C Carpenter, S Paul, V Rozot, ...
PLoS pathogens 12 (7), e1005760, 2016
1372016
Human CD8+ T-Cell Responses Against the 4 Dengue Virus Serotypes Are Associated With Distinct Patterns of Protein Targets
D Weiskopf, C Cerpas, MA Angelo, DJ Bangs, J Sidney, S Paul, B Peters, ...
The Journal of infectious diseases 212 (11), 1743-1751, 2015
1312015
Predicting HLA CD4 immunogenicity in human populations
SK Dhanda, E Karosiene, L Edwards, A Grifoni, S Paul, M Andreatta, ...
Frontiers in immunology 9, 1369, 2018
1262018
Human CD4+ T Cell Responses to an Attenuated Tetravalent Dengue Vaccine Parallel Those Induced by Natural Infection in Magnitude, HLA Restriction, and …
MA Angelo, A Grifoni, PH O'Rourke, J Sidney, S Paul, B Peters, ...
Journal of virology 91 (5), 10.1128/jvi. 02147-16, 2017
932017
HLA-DRB1 Alleles Are Associated With Different Magnitudes of Dengue Virus–Specific CD4+ T-Cell Responses
D Weiskopf, MA Angelo, A Grifoni, PH O'Rourke, J Sidney, S Paul, ...
The Journal of infectious diseases 214 (7), 1117-1124, 2016
922016
Th1 versus Th2 T cell polarization by whole-cell and acellular childhood pertussis vaccines persists upon re-immunization in adolescence and adulthood
T Bancroft, MBC Dillon, R da Silva Antunes, S Paul, B Peters, S Crotty, ...
Cellular immunology 304, 35-43, 2016
922016
Automatic generation of validated specific epitope sets
S Carrasco Pro, J Sidney, S Paul, C Lindestam Arlehamn, D Weiskopf, ...
Journal of immunology research 2015 (1), 763461, 2015
842015
Benchmarking predictions of MHC class I restricted T cell epitopes in a comprehensively studied model system
S Paul, NP Croft, AW Purcell, DC Tscharke, A Sette, M Nielsen, B Peters
PLoS computational biology 16 (5), e1007757, 2020
832020
Footprints of antigen processing boost MHC class II natural ligand predictions
C Barra, B Alvarez, S Paul, A Sette, B Peters, M Andreatta, S Buus, ...
Genome medicine 10, 1-15, 2018
792018
Immunological consequences of intragenus conservation of Mycobacterium tuberculosis T-cell epitopes
CS Lindestam Arlehamn, S Paul, F Mele, C Huang, JA Greenbaum, R Vita, ...
Proceedings of the National Academy of Sciences 112 (2), E147-E155, 2015
712015
Evaluating the Immunogenicity of Protein Drugs by Applying In Vitro MHC Binding Data and the Immune Epitope Database and Analysis Resource
S Paul, RV Kolla, J Sidney, D Weiskopf, W Fleri, Y Kim, B Peters, A Sette
Journal of Immunology Research 2013 (1), 467852, 2013
612013
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