| Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data LC Hughes, G Ortí, Y Huang, Y Sun, CC Baldwin, AW Thompson, D Arcila, ... Proceedings of the National Academy of Sciences 115 (24), 6249-6254, 2018 | 568 | 2018 |
| Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes R Betancur-R, D Arcila, RP Vari, LC Hughes, C Oliveira, MH Sabaj, G Ortí Evolution 73 (2), 329-345, 2019 | 107 | 2019 |
| Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria) D Campanella, LC Hughes, PJ Unmack, DD Bloom, KR Piller, G Ortí Molecular phylogenetics and evolution 86, 8-23, 2015 | 83 | 2015 |
| Phylogenomics of piranhas and pacus (Serrasalmidae) uncovers how dietary convergence and parallelism obfuscate traditional morphological taxonomy MA Kolmann, LC Hughes, LP Hernandez, D Arcila, R Betancur-R, ... Systematic Biology 70 (3), 576-592, 2021 | 51 | 2021 |
| Evolutionary determinism and convergence associated with water-column transitions in marine fishes M Rincon-Sandoval, E Duarte-Ribeiro, AM Davis, A Santaquiteria, ... Proceedings of the National Academy of Sciences 117 (52), 33396-33403, 2020 | 51 | 2020 |
| Biogeography, habitat transitions and hybridization in a radiation of South American silverside fishes revealed by mitochondrial and genomic RAD data LC Hughes, YP Cardoso, JA Sommer, R Cifuentes, M Cuello, ... Molecular Ecology 29 (4), 738-751, 2020 | 39 | 2020 |
| Kisspeptin system in pejerrey fish (Odontesthes bonariensis). Characterization and gene expression pattern during early developmental stages MOT Bohórquez, AS Mechaly, LC Hughes, D Campanella, G Ortí, ... Comparative Biochemistry and Physiology Part A: Molecular & Integrative …, 2017 | 32 | 2017 |
| Transcriptomic differentiation underlying marine‐to‐freshwater transitions in the South American silversides Odontesthes argentinensis and O. bonariensis (Atheriniformes) LC Hughes, GM Somoza, BN Nguyen, JP Bernot, M González‐Castro, ... Ecology and evolution 7 (14), 5258-5268, 2017 | 31 | 2017 |
| Testing the utility of alternative metrics of branch support to address the ancient evolutionary radiation of tunas, stromateoids, and allies (Teleostei: Pelagiaria) D Arcila, LC Hughes, B Meléndez-Vazquez, CC Baldwin, WT White, ... Systematic biology 70 (6), 1123-1144, 2021 | 29 | 2021 |
| Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics LC Hughes, G Ortí, H Saad, C Li, WT White, CC Baldwin, KA Crandall, ... Molecular Ecology Resources 21 (3), 816-833, 2021 | 28* | 2021 |
| Concordance and discordance in the phylogenomics of the wrasses and parrotfishes (Teleostei: Labridae) LC Hughes, CM Nash, WT White, MW Westneat Systematic Biology 72 (3), 530-543, 2023 | 23 | 2023 |
| The impact of paleoclimatic changes on body size evolution in marine fishes EM Troyer, R Betancur-R, LC Hughes, M Westneat, G Carnevale, ... Proceedings of the National Academy of Sciences 119 (29), e2122486119, 2022 | 23 | 2022 |
| Phylogenomics of Bony-Tongue Fishes (Osteoglossomorpha) Shed Light on the Craniofacial Evolution and Biogeography of the Weakly Electric Clade (Mormyridae) RD Peterson, JP Sullivan, CD Hopkins, A Santaquiteria, CB Dillman, ... Systematic Biology 71 (5), 1032–1044, 2022 | 22 | 2022 |
| Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei) CJ Atta, H Yuan, C Li, D Arcila, R Betancur-R, LC Hughes, G Ortí, ... Molecular Phylogenetics and Evolution 166, 107315, 2022 | 13 | 2022 |
| Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae) CM Nash, LL Lungstrom, LC Hughes, MW Westneat Molecular Phylogenetics and Evolution 177, 107616, 2022 | 10 | 2022 |
| Can ecotypic differences in male courtship behaviour be explained by visual cues provided by female threespine stickleback? LC Hughes, SA Foster, JA Baker Evolutionary Ecology Research 15 (4), 437-451, 2013 | 6 | 2013 |
| Hybridization is strongly constrained by salinity during secondary contact between silverside fishes (Odontesthes, Atheriniformes) M González-Castro, YP Cardoso, LC Hughes, G Ortí Heredity 129 (4), 233-243, 2022 | 5 | 2022 |
| Phylogenomic and comparative genomic analyses support a single evolutionary origin of flatfish asymmetry E Duarte-Ribeiro, U Rosas-Puchuri, M Friedman, GC Woodruff, ... Nature genetics, 1-4, 2024 | 2 | 2024 |
| Phylogenomic resolution of lampreys reveals the recent evolution of an ancient vertebrate lineage LC Hughes, DD Bloom, KR Piller, N Lang, RL Mayden Proceedings B 292 (2038), 20242101, 2025 | | 2025 |
| Tackling Evolutionary Questions in Fishes with Genome-Wide Data from Recent Speciation to Ancient Divergences LC Hughes The George Washington University, 2018 | | 2018 |
